genome.fa.s3032.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003032.1 Hibiscus syriacus cultivar Beakdansim tig00006312_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158183

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2065--2109	16	2.9	15	81	18	56	26	0	2	71	0.98
3925--3999	3	25.0	3	86	0	87	33	4	33	29	1.76
8558--8628	21	3.0	25	72	18	69	28	1	4	66	1.19
12139--12298	65	2.5	66	83	7	195	29	23	18	28	1.98
12139--12316	65	2.7	63	80	9	182	28	24	19	28	1.98
17941--18022	23	3.6	22	78	8	94	23	25	25	25	2.00
20633--20840	65	3.2	63	79	12	217	31	24	17	26	1.97
22928--22977	21	2.4	21	93	0	82	14	16	34	36	1.88
25020--25090	2	35.5	2	100	0	142	50	0	0	49	1.00
25092--25253	4	42.0	4	79	7	75	38	0	61	0	0.96
25095--25253	8	20.6	8	79	8	116	37	0	62	0	0.96
25092--25255	12	13.7	12	74	9	102	37	0	62	0	0.96
26347--26393	17	2.7	18	77	9	53	44	8	0	46	1.33
26207--26468	93	2.9	91	86	4	350	39	12	3	43	1.61
28728--28769	22	1.9	22	90	9	68	23	0	2	73	0.94
32042--32103	18	3.6	17	77	14	65	38	17	8	35	1.80
32211--32271	26	2.2	28	86	11	83	42	0	1	55	1.09
32210--32271	13	4.6	13	79	16	65	43	0	1	54	1.09
36272--36316	20	2.2	21	84	4	56	35	2	0	62	1.08
40284--40470	84	2.2	84	82	3	216	26	18	20	35	1.95
41722--41920	95	2.1	95	88	0	290	32	15	16	35	1.90
44663--44745	41	1.9	45	83	9	111	71	3	6	19	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46957--46981	13	1.9	13	100	0	50	40	24	0	36	1.55
48271--48350	41	2.0	41	85	5	108	31	22	18	27	1.97
49159--49257	13	7.9	13	67	14	57	59	4	0	36	1.16
50650--50749	3	34.0	3	85	2	132	64	0	3	33	1.09
50655--50764	12	9.9	11	77	16	61	64	0	4	30	1.13
50999--51776	114	6.8	113	92	2	1240	28	19	13	37	1.90
50997--51776	341	2.3	340	93	2	1323	28	19	13	37	1.91
52329--52527	83	2.4	83	98	0	380	36	22	13	28	1.91
52477--52899	52	8.1	52	93	2	699	38	22	14	24	1.91
53686--53723	16	2.4	16	82	8	51	57	7	5	28	1.49
54044--54105	1	62.0	1	77	0	61	0	11	0	88	0.51
54041--54103	20	3.1	20	88	6	92	0	12	0	87	0.55
54041--54108	11	6.5	11	83	14	90	0	13	0	86	0.56
57622--57646	8	3.1	8	100	0	50	64	0	12	24	1.27
64665--64701	15	2.7	15	88	12	53	62	8	5	24	1.44
65388--65486	13	7.9	13	67	14	57	59	4	0	36	1.16
66873--66970	3	33.0	3	84	2	126	64	0	3	32	1.09
66875--66985	12	9.9	11	77	15	61	64	0	4	30	1.13
68190--68225	17	2.1	17	100	0	72	38	36	0	25	1.56
81096--81150	25	2.2	25	80	6	67	34	5	0	60	1.20
84683--84987	150	2.0	150	96	0	556	33	18	21	26	1.96
86516--86562	23	2.0	23	100	0	94	19	21	4	55	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90818--90860	3	14.7	3	81	13	54	32	2	0	65	1.06
92270--92335	31	2.1	31	86	13	91	42	0	0	57	0.98
96348--96379	15	2.1	15	94	0	55	28	18	6	46	1.73
103715--103820	8	13.9	8	79	11	62	85	0	14	0	0.59
103715--103831	13	8.5	14	76	16	111	85	0	14	0	0.60
103716--103801	41	2.0	44	91	6	142	89	0	10	0	0.48
103715--103801	1	87.0	1	79	0	93	89	0	10	0	0.48
103715--103831	21	5.8	19	82	14	119	85	0	14	0	0.60
103715--103833	53	2.2	55	85	5	154	85	0	14	0	0.59
104826--105208	93	4.1	93	96	0	687	27	15	21	35	1.94
106147--106235	36	2.6	34	94	3	151	49	10	20	20	1.77
106144--106235	34	2.6	36	91	5	152	50	9	20	19	1.76
106034--106348	143	2.1	150	88	6	466	41	12	19	26	1.87
106302--106346	24	1.9	23	82	13	56	51	6	24	17	1.70
106182--106817	113	5.7	112	83	8	671	38	14	18	28	1.89
106181--106696	225	2.3	221	87	7	737	38	14	18	28	1.90
106618--106903	120	2.4	117	87	5	380	42	15	17	24	1.88
107042--107090	3	16.7	3	87	12	75	32	0	0	67	0.91
108370--108440	28	2.6	28	77	6	74	33	5	2	57	1.37
112417--112473	28	2.0	28	100	0	114	24	21	29	24	1.99
125552--125604	14	4.1	14	76	18	60	47	1	7	43	1.42
125566--125614	24	2.0	24	92	0	80	48	0	4	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125536--125673	75	1.9	74	89	1	213	45	1	7	44	1.41
126756--126785	13	2.2	14	94	5	53	70	0	3	26	1.03
127118--127217	50	2.0	50	90	0	155	44	7	2	47	1.41
127510--127546	19	1.9	19	94	0	65	32	29	16	21	1.95
127657--127783	20	6.3	20	82	5	157	28	27	17	26	1.98
128332--128384	20	2.7	20	96	0	97	30	28	16	24	1.97
128586--128650	11	5.6	11	72	22	53	24	23	26	26	2.00
128585--128656	23	3.1	23	85	2	99	25	22	26	26	2.00
128638--128670	17	1.9	17	93	0	57	33	21	18	27	1.96
128950--129043	21	4.5	21	76	5	91	45	28	0	25	1.54
129319--129348	14	2.1	14	93	0	51	43	0	6	50	1.28
129552--129703	20	7.5	20	77	8	164	30	28	17	23	1.97
129552--129703	61	2.5	61	92	0	250	30	28	17	23	1.97
131497--131542	20	2.3	20	88	0	65	15	21	28	34	1.94
133442--133531	20	4.6	20	80	1	74	45	23	17	13	1.84
133520--133551	14	2.3	14	94	0	55	50	18	21	9	1.75
133778--133818	3	13.7	3	89	0	64	68	26	0	4	1.10
133778--133818	12	3.4	12	96	0	73	68	26	0	4	1.10
135400--135445	19	2.4	19	85	3	56	21	17	30	30	1.96
135411--135447	19	1.9	19	94	0	65	21	16	29	32	1.95
135541--135609	11	6.4	11	73	19	56	43	10	0	46	1.37
135541--135600	20	3.0	20	97	0	111	43	10	0	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135560--135625	14	4.3	14	75	20	51	43	9	0	46	1.35
135548--135600	9	5.4	9	79	16	61	41	11	0	47	1.39
136576--136634	24	2.5	24	74	0	64	10	10	20	59	1.58
136925--136961	20	1.9	19	89	10	58	45	10	24	18	1.81
137516--137692	90	2.0	89	92	3	293	27	29	14	28	1.95
150977--151465	238	2.1	238	89	0	735	23	28	16	31	1.96

Tables:   1

The End!