genome.fa.s3033.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003033.1 Hibiscus syriacus cultivar Beakdansim tig00006313_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68792

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11385--11870	238	2.1	235	88	1	702	23	27	17	31	1.96
24029--24093	36	1.9	36	84	12	93	36	0	32	30	1.58
24589--24641	21	2.5	21	78	6	63	22	26	16	33	1.96
24631--24702	20	3.5	20	92	1	108	40	16	22	20	1.91
24691--24805	20	5.7	20	83	6	124	32	26	19	22	1.97
25382--25435	19	2.8	19	94	0	90	44	14	22	18	1.86
25430--25483	14	3.5	14	75	22	54	11	22	20	46	1.82
27053--27140	41	2.1	42	85	2	115	20	14	42	22	1.89
27080--27144	21	3.1	21	71	8	69	21	10	43	24	1.84
27053--27144	42	2.2	41	86	1	121	20	14	42	22	1.88
27482--27557	20	3.8	20	85	0	80	35	27	18	18	1.94
27544--27589	19	2.4	19	81	0	65	47	19	17	15	1.82
27568--27642	33	2.3	33	92	0	123	50	18	18	12	1.77
27553--27621	19	3.9	19	72	18	67	50	14	18	15	1.78
27649--27765	19	6.6	19	73	19	92	12	19	22	45	1.84
27671--27729	14	3.9	14	76	20	64	10	15	23	50	1.74
27654--27745	33	2.8	33	94	0	166	11	17	21	48	1.79
27718--27784	20	3.4	19	81	6	71	14	22	23	38	1.92
29689--29747	20	3.0	20	89	0	82	45	22	18	13	1.84
30002--30051	22	2.4	21	81	15	59	22	12	42	24	1.87
30010--30053	22	2.0	22	91	8	72	18	13	45	22	1.84
30240--30324	20	4.2	20	76	8	82	23	18	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30260--30337	41	1.9	41	91	0	129	23	17	23	35	1.95
30220--30334	20	5.7	20	74	9	81	24	18	23	33	1.96
30260--30355	41	2.3	41	85	3	122	21	20	22	34	1.97
30364--30416	21	2.5	22	81	6	74	33	18	26	20	1.96
34651--34727	12	6.4	12	73	10	59	45	2	1	50	1.23
35553--35582	2	15.0	2	100	0	60	50	0	0	50	1.00
36441--36492	24	2.2	24	82	3	61	50	9	7	32	1.64
50106--50130	2	12.5	2	100	0	50	0	48	0	52	1.00
53498--53544	18	2.6	18	93	0	76	27	23	19	29	1.98
53851--53902	24	2.2	24	100	0	104	28	3	7	59	1.43
63517--63570	20	2.7	20	94	0	90	25	20	20	33	1.97

Tables:   1

The End!