Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003034.1 Hibiscus syriacus cultivar Beakdansim tig00006314_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72493

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1237--1266
10
3.0
10
100
0
60
0
10
20
70
1.16
1418--1465
19
2.5
19
93
0
78
29
22
27
20
1.99
1470--1611
72
2.0
71
84
6
189
28
14
21
35
1.93
3698--3732
16
2.2
16
100
0
70
31
22
28
17
1.96
6784--6870
45
1.9
45
92
0
147
14
32
12
40
1.84
9617--9677
26
2.3
26
94
0
104
22
26
24
26
2.00
11604--11640
17
2.2
17
90
9
58
51
8
0
40
1.32
12382--12490
46
2.4
46
82
3
121
39
15
11
33
1.83
16959--17073
60
1.9
60
84
7
153
40
16
12
31
1.85
19922--19968
24
2.0
24
91
0
76
46
4
42
6
1.48
21356--21415
31
2.0
30
83
6
77
43
11
13
31
1.80
23083--23119
14
2.7
14
91
4
58
54
8
0
37
1.30
23474--23538
28
2.3
28
100
0
130
24
27
29
18
1.98
32275--32330
17
3.2
18
75
12
62
16
21
3
58
1.52
32601--32905
65
4.7
65
86
3
393
33
22
15
29
1.94
32601--32907
127
2.4
129
86
2
420
32
22
14
29
1.94
36834--37079
29
8.6
29
78
3
246
22
25
19
32
1.97
45769--45808
14
2.9
14
88
3
64
60
27
10
2
1.42
45756--45785
10
3.0
10
95
0
51
60
23
10
6
1.52
46062--46107
14
3.1
14
87
6
65
52
17
13
17
1.75
61519--61575
11
4.8
11
74
16
51
77
3
17
1
1.00
61532--61575
13
3.2
13
81
12
61
79
2
15
2
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61655--61792
69
2.0
69
91
2
224
36
21
13
27
1.92
62715--62829
32
3.6
31
80
4
113
28
14
20
35
1.93
63372--63488
44
2.7
43
93
2
198
29
33
17
18
1.95
63538--63783
106
2.3
105
88
4
350
33
21
19
25
1.97
63930--64116
102
1.8
102
82
4
243
28
18
12
40
1.87
64289--64379
35
2.5
37
87
12
145
41
19
8
29
1.82
65723--65797
4
18.2
4
73
22
50
20
4
2
73
1.12
65696--65780
32
2.6
32
77
17
86
17
5
5
70
1.28
65699--65743
23
1.9
24
86
4
65
22
4
8
64
1.40
65724--65797
33
2.2
33
83
9
89
18
4
2
74
1.10
65747--65823
33
2.4
31
77
12
73
20
5
3
70
1.23
68763--68800
20
1.9
20
94
0
67
42
10
23
23
1.85
68763--68806
20
2.3
19
88
7
63
43
9
25
22
1.82
70663--70700
9
4.4
9
80
12
53
34
0
18
47
1.49
71472--71531
28
2.1
28
90
0
93
30
13
25
31
1.93
71479--71542
28
2.3
28
88
0
92
32
12
21
32
1.91
72110--72155
2
23.0
2
100
0
92
50
0
0
50
1.00

Tables:   1

The End!