Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003035.1 Hibiscus syriacus cultivar Beakdansim tig00006316_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96096

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2669--2935
130
2.1
129
96
3
493
23
16
19
39
1.92
13171--13213
14
3.0
15
80
10
54
69
9
4
16
1.31
14527--14567
11
3.8
10
87
9
55
41
0
2
56
1.13
14563--14647
3
28.7
3
85
2
118
61
1
2
35
1.17
14977--15867
226
4.0
225
93
2
1425
29
19
13
37
1.90
14974--15875
113
8.0
113
87
3
1264
29
19
13
37
1.90
14975--15848
450
1.9
448
92
1
1446
29
19
13
37
1.90
16659--17024
83
4.4
83
91
3
596
36
21
13
29
1.91
17757--17804
19
2.7
18
87
9
64
56
8
6
29
1.53
18134--18200
11
6.0
11
83
11
75
1
14
0
83
0.72
18138--18199
12
4.9
13
75
18
60
1
16
0
82
0.75
30940--30980
11
3.8
10
87
9
55
41
0
2
56
1.13
30976--31058
3
27.7
3
87
0
121
61
1
2
34
1.17
40249--40386
59
2.5
53
81
10
147
22
15
25
36
1.93
40280--40400
59
2.1
59
93
0
206
25
15
23
34
1.95
44733--44803
23
3.1
22
80
13
74
32
2
8
56
1.44
45392--45449
30
1.9
31
96
3
109
25
13
27
32
1.94
45811--45885
36
2.1
36
97
0
141
32
18
12
37
1.88
48144--48206
22
2.9
22
87
0
90
12
22
30
34
1.91
49821--49862
19
2.2
19
86
0
57
14
23
11
50
1.76
50297--50344
15
3.1
15
79
5
51
41
4
12
41
1.62
50772--50803
14
2.3
14
100
0
64
53
0
6
40
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51527--52339
372
2.2
359
84
4
1049
26
20
17
35
1.94
57682--57706
12
2.1
12
100
0
50
48
0
36
16
1.46
60489--60513
9
2.8
9
100
0
50
0
36
0
64
0.94
60485--60518
11
3.1
11
87
12
52
0
35
0
64
0.94
61566--61795
34
6.6
34
69
10
142
39
9
17
33
1.82
61635--61678
17
2.5
19
75
20
51
47
9
18
25
1.77
61652--61888
37
6.4
36
70
12
122
37
9
20
33
1.84
61565--61795
71
3.3
71
84
6
271
39
9
18
32
1.83
70374--70398
4
6.2
4
100
0
50
52
0
24
24
1.48
71690--71747
22
2.6
22
80
2
71
56
27
3
12
1.51
72567--72643
38
2.0
38
100
0
154
46
15
10
27
1.78
80768--80825
21
2.7
22
81
7
66
24
24
31
20
1.98
93487--93547
23
2.5
23
79
12
61
27
6
0
65
1.17
93537--93614
2
40.5
2
92
7
135
47
0
0
52
1.00
93536--93622
30
3.0
30
89
5
106
43
0
0
56
0.99
93502--93754
17
15.6
16
69
18
64
31
3
1
64
1.18
93592--93695
13
8.3
12
71
17
52
24
2
1
71
1.10
93732--93827
39
2.7
35
70
17
81
35
4
4
56
1.38

Tables:   1

The End!