genome.fa.s3036.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003036.1 Hibiscus syriacus cultivar Beakdansim tig00006317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78458

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1899--1941	4	12.0	4	77	22	51	0	25	0	74	0.82
1903--1946	7	6.3	7	94	5	72	0	25	0	75	0.81
1911--1959	16	3.2	16	85	5	57	2	20	0	77	0.87
3656--4197	54	10.1	53	80	7	536	31	19	15	33	1.93
3656--4197	108	5.1	107	83	7	645	31	19	15	33	1.93
3656--4197	162	3.4	160	86	5	672	31	19	15	33	1.93
10662--11214	54	10.2	54	91	2	853	29	18	17	34	1.94
11356--11382	13	2.1	13	100	0	54	0	44	18	37	1.50
11489--11532	7	6.3	7	89	0	70	43	36	2	18	1.63
15819--15863	13	3.5	13	84	6	65	22	46	15	15	1.83
15913--15952	19	2.1	19	85	0	53	55	0	0	45	0.99
15975--16008	12	2.9	12	95	4	61	32	50	8	8	1.64
16532--16586	22	2.7	20	81	10	65	60	1	0	38	1.08
19400--19440	20	2.0	20	85	0	55	46	4	0	48	1.23
20711--20760	23	2.2	23	85	7	66	64	2	6	28	1.28
20717--20762	23	2.0	23	91	4	76	67	0	6	26	1.15
21486--21716	87	2.6	88	86	5	317	34	15	12	36	1.86
23633--23710	37	2.1	37	85	4	104	50	0	3	46	1.20
23683--23733	18	2.9	17	85	5	66	56	1	1	39	1.22
24100--24152	27	2.0	27	100	0	106	45	1	11	41	1.51
28151--28176	8	3.2	8	100	0	52	50	0	11	38	1.39
31231--31298	28	2.4	28	100	0	136	25	17	11	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33553--33606	23	2.3	24	81	9	67	61	3	5	29	1.36
34083--34121	15	2.6	16	84	12	55	51	0	0	48	1.00
34083--34121	17	2.4	17	87	8	55	51	0	0	48	1.00
34960--35098	20	6.9	21	71	9	67	30	11	20	37	1.88
52585--52644	19	3.2	18	69	21	52	26	18	8	46	1.77
52673--52746	38	1.9	38	89	5	114	31	17	9	41	1.81
52673--52765	38	2.5	39	82	10	113	32	20	8	38	1.83
52674--52831	38	4.4	36	71	20	111	33	19	8	38	1.82
52706--52842	66	2.1	67	90	6	217	32	18	7	40	1.79
52604--52907	168	1.8	168	81	7	384	33	20	8	37	1.83
52973--53111	36	3.8	36	85	2	134	29	21	11	37	1.89
53011--53120	36	3.0	36	89	4	150	28	23	12	35	1.92
53153--53228	15	4.7	15	70	17	53	27	26	13	32	1.93
53110--53208	37	2.7	37	85	1	146	23	24	15	37	1.93
53153--53259	51	2.1	51	92	0	178	24	25	14	35	1.94
53198--53304	36	2.9	36	78	8	115	27	22	15	34	1.95
52974--53304	124	2.6	125	78	12	320	27	22	13	36	1.92
53203--53311	39	2.9	37	80	10	114	28	20	14	36	1.92
53313--53503	52	3.7	52	83	4	235	30	9	19	39	1.84
61873--61902	13	2.4	12	94	5	51	90	0	10	0	0.47
62150--62192	20	2.2	20	91	0	68	32	11	20	34	1.89
64222--64290	22	3.4	22	73	19	85	47	10	24	17	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64212--64343	39	3.5	39	90	6	202	44	11	22	21	1.84
64284--64555	105	2.6	105	88	2	377	39	14	20	24	1.91
64564--64646	42	1.9	43	85	9	116	26	21	20	31	1.98
68731--68776	17	2.8	17	80	9	51	13	19	13	54	1.71
68970--69219	65	3.8	65	89	0	383	33	21	14	30	1.93
68951--69229	130	2.2	130	90	0	425	32	21	14	31	1.93
73024--73072	20	2.4	20	86	3	62	18	2	2	77	0.96
73771--73851	15	5.5	15	70	5	58	49	3	3	43	1.38
76680--76728	16	3.2	16	79	20	52	40	8	0	51	1.32

Tables:   1

The End!