genome.fa.s3037.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003037.1 Hibiscus syriacus cultivar Beakdansim tig00006318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69096

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
986--1514	178	3.0	182	87	6	731	42	12	17	27	1.85
3122--3281	87	1.8	86	91	1	266	30	16	11	41	1.84
3206--3250	23	2.0	23	86	0	63	33	22	8	35	1.85
7945--8065	64	1.9	64	84	8	165	29	29	22	18	1.97
8116--8154	16	2.4	16	91	0	60	20	28	17	33	1.96
9105--9151	24	2.0	24	83	8	60	48	4	8	38	1.53
11785--11832	20	2.4	20	96	0	87	12	20	43	22	1.86
12175--12309	60	2.2	60	85	6	193	37	11	4	47	1.59
12685--12754	20	3.6	20	84	7	83	42	2	7	47	1.45
12708--12833	2	62.0	2	73	14	89	45	4	3	46	1.40
12866--12923	22	2.5	22	86	10	73	46	6	0	46	1.29
12926--13007	11	7.8	10	70	22	53	47	2	2	47	1.28
12970--13007	11	3.5	11	88	0	58	44	2	2	50	1.30
13055--13093	20	2.0	19	90	5	60	35	5	12	46	1.65
13736--13810	35	2.1	35	92	0	123	33	29	28	9	1.88
13888--13962	24	3.2	23	84	5	105	36	21	17	25	1.95
13892--13977	23	3.7	23	84	3	109	38	19	17	24	1.93
13871--13984	47	2.4	47	80	2	131	40	20	14	24	1.90
15120--15155	18	2.0	18	88	0	54	30	16	0	52	1.44
16453--16506	8	7.4	8	78	17	64	22	24	37	16	1.94
16453--16487	15	2.3	15	100	0	70	28	25	31	14	1.95
16480--16511	13	2.5	13	94	0	55	12	21	46	18	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16474--16526	18	2.8	18	88	8	70	15	20	45	18	1.85
16480--16541	31	2.0	31	87	6	90	16	19	45	19	1.86
16508--16554	13	3.6	13	85	0	67	19	17	42	21	1.89
17337--17422	2	43.5	2	80	15	99	48	1	2	47	1.22
17437--17482	14	3.3	14	84	0	56	47	26	2	23	1.63
17577--17676	39	2.5	39	82	4	121	41	6	6	47	1.53
17669--17706	20	1.9	19	94	5	67	34	5	13	47	1.65
17689--17776	2	43.0	2	77	8	88	45	5	2	46	1.39
17793--18258	205	2.2	205	88	6	677	28	12	8	50	1.69
20649--20711	23	2.7	23	97	0	117	22	19	28	30	1.98
28069--28104	16	2.2	16	100	0	72	44	5	25	25	1.75
37419--37512	9	10.8	9	81	11	99	79	0	10	9	0.93
37417--37513	17	5.4	18	66	27	55	80	0	10	9	0.91
37419--37540	26	4.8	26	74	17	98	80	0	10	8	0.95
37419--37540	9	14.5	8	80	11	95	80	0	10	8	0.95
38694--38973	55	5.1	55	90	1	456	28	14	28	28	1.95
38694--38976	108	2.6	110	92	2	480	28	14	27	28	1.95
38969--39573	52	11.6	52	93	0	1003	29	16	25	29	1.96
43081--43183	25	4.1	25	100	0	206	15	19	0	65	1.28
43081--43171	13	7.2	13	70	7	80	15	20	0	63	1.30
43093--43186	12	7.6	12	71	7	80	15	18	0	65	1.26
49799--49827	15	1.9	15	100	0	58	34	20	6	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58662--58760	21	4.7	21	91	2	128	33	30	13	23	1.92
58660--58760	42	2.4	42	88	0	148	32	29	13	23	1.94
60127--60151	13	1.9	13	100	0	50	32	0	16	52	1.44
60339--60370	12	2.7	12	100	0	64	50	0	25	25	1.50
60480--60585	37	2.9	36	90	5	169	16	27	33	21	1.95
66829--66899	35	2.0	36	97	2	135	16	32	30	19	1.95

Tables:   1

The End!