genome.fa.s3039.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003039.1 Hibiscus syriacus cultivar Beakdansim tig00006321_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  177064

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619--692	21	3.5	21	74	7	69	22	35	18	22	1.96
585--698	42	2.7	42	84	2	140	21	35	17	25	1.95
637--701	21	3.1	20	71	8	58	20	36	18	24	1.94
2025--2173	64	2.3	64	91	2	237	28	2	16	51	1.58
2509--2544	18	2.0	18	88	0	54	16	0	22	61	1.35
4782--4852	24	3.0	24	93	0	124	33	18	22	25	1.96
4976--5009	12	2.8	12	90	0	50	14	0	29	55	1.40
5774--5900	20	6.4	19	73	14	80	33	14	23	28	1.95
5794--5921	40	3.2	40	83	2	159	32	14	25	28	1.94
5850--5950	21	5.0	20	77	11	89	28	13	27	29	1.95
13681--13715	13	2.7	13	95	0	61	31	11	14	42	1.81
14452--14514	12	5.2	12	72	9	56	31	7	38	22	1.83
14448--14514	25	2.7	25	95	2	118	31	7	37	23	1.83
14463--14506	13	3.5	13	75	6	54	31	6	40	20	1.79
17056--17122	20	3.1	21	76	15	66	31	22	20	25	1.98
17586--17649	33	1.9	33	87	6	94	32	17	25	25	1.96
27489--27515	3	9.0	3	100	0	54	66	0	0	33	0.92
29644--29678	3	11.7	3	100	0	70	68	31	0	0	0.90
38487--38564	5	16.0	5	94	5	142	60	0	0	39	0.97
39585--39754	81	2.1	81	94	0	295	34	5	24	36	1.78
41838--41885	18	2.7	18	75	12	53	64	10	14	10	1.49
43472--43514	21	2.0	21	81	0	50	27	11	4	55	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44770--44795	4	6.5	4	100	0	52	26	0	73	0	0.84
50126--50162	19	1.9	19	94	0	65	29	2	2	64	1.21
50538--50582	23	2.0	22	87	8	65	73	0	13	13	1.10
50562--50596	13	2.6	14	95	4	63	71	0	20	8	1.11
54132--54187	25	2.1	28	80	12	64	14	10	14	60	1.58
56215--56275	24	2.6	23	80	10	70	54	6	0	39	1.27
57019--57076	2	29.0	2	100	0	116	50	0	0	50	1.00
68059--68163	45	2.3	46	90	1	158	31	16	21	30	1.95
68105--68249	65	2.2	65	79	7	161	28	17	22	31	1.96
68151--68197	19	2.5	19	83	10	62	25	17	31	25	1.97
68417--68456	20	2.0	21	85	14	57	45	7	5	42	1.54
72230--72423	76	2.6	77	89	6	290	18	24	33	23	1.97
73020--73061	17	2.7	15	82	13	57	57	28	0	14	1.38
73024--73057	17	2.0	17	94	0	59	55	32	0	11	1.36
80797--80995	75	2.6	77	88	3	280	19	24	33	23	1.97
80797--81000	77	2.7	76	87	5	281	19	24	33	23	1.97
84368--84407	21	1.9	21	85	10	55	35	10	2	52	1.48
86333--86496	65	2.5	64	84	1	220	27	15	25	31	1.96
86713--86752	20	2.0	21	85	14	57	45	7	5	42	1.54
90075--90135	24	2.6	23	80	10	70	54	6	0	39	1.27
100160--100369	75	2.8	77	86	5	293	20	23	32	23	1.97
102906--102990	20	4.1	20	73	15	64	17	24	35	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108756--108965	75	2.8	77	85	5	284	20	23	32	23	1.98
110318--110358	19	2.2	19	100	0	82	31	26	19	21	1.97
110386--110438	21	2.5	21	90	0	79	32	32	18	16	1.94
110434--110530	19	4.9	19	81	9	122	21	19	25	32	1.97
110434--110530	42	2.4	39	88	6	133	21	19	25	32	1.97
110710--110734	6	4.2	6	100	0	50	0	16	48	36	1.46
110823--110958	21	6.7	19	80	8	128	33	25	19	22	1.97
110830--110939	40	2.7	42	91	5	174	34	24	20	20	1.96
110823--110958	61	2.2	60	84	7	168	33	25	19	22	1.97
113394--113435	22	1.9	23	85	9	61	76	2	4	16	1.07
114084--114247	76	2.2	75	88	3	240	56	10	2	30	1.46
115866--115908	18	2.3	19	88	4	61	6	18	13	60	1.55
116111--116156	8	5.5	8	85	10	65	82	2	2	13	0.85
116111--116164	28	2.0	26	85	7	72	81	3	1	12	0.91
116113--116173	19	3.0	21	72	18	58	77	4	3	14	1.07
122371--122534	76	2.2	75	85	3	213	56	10	3	29	1.49
129684--129726	21	2.0	21	100	0	86	20	4	13	60	1.51
130698--130726	15	1.9	15	100	0	58	27	31	27	13	1.94
139298--139454	15	9.9	15	76	17	140	44	0	3	50	1.24
139416--139472	18	3.4	18	69	18	59	33	0	12	54	1.38
139402--139477	32	2.4	32	97	0	143	36	0	9	53	1.33
139509--139763	32	8.5	32	67	27	141	35	0	11	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139591--139699	22	5.0	22	97	0	200	36	0	11	51	1.39
139655--139843	80	2.3	83	88	7	287	33	0	13	52	1.41
139791--139875	32	2.7	32	96	0	152	36	0	11	51	1.39
139855--139920	21	3.1	21	91	2	105	37	0	12	50	1.40
139898--139982	32	2.7	32	100	0	170	34	0	12	52	1.40
139877--140159	80	3.5	80	92	4	426	33	0	13	52	1.43
140123--140166	22	2.0	22	95	4	81	34	0	13	52	1.41
140189--140247	31	1.9	31	92	0	100	42	10	6	40	1.65
140265--140307	16	2.7	16	92	0	68	23	6	6	62	1.45
146635--146674	21	1.9	21	89	0	62	30	7	2	60	1.38
148473--148533	19	2.9	22	79	18	76	37	13	0	49	1.42
148484--148529	19	2.4	19	96	3	83	39	13	0	47	1.42
159807--159849	18	2.4	18	96	0	77	41	16	23	18	1.89
160808--160850	18	2.4	18	88	0	59	37	32	11	18	1.87
167693--167727	18	1.9	18	94	0	61	25	34	20	20	1.96
168358--168442	30	2.9	29	79	8	91	41	4	20	34	1.73
168358--168415	29	2.0	29	89	3	89	41	5	20	32	1.75
169387--169443	26	2.2	26	84	6	71	33	10	8	47	1.69
174822--174956	51	2.6	51	84	2	164	17	34	27	20	1.95

Tables:   1

The End!