genome.fa.s304.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000304.1 Hibiscus syriacus cultivar Beakdansim tig00000573_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68738

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3597--3651	22	2.5	22	90	0	92	34	12	14	38	1.84
4331--5076	76	9.9	76	95	1	1245	22	20	21	35	1.96
5247--5304	3	18.0	3	85	7	62	39	0	0	60	0.97
5252--5316	15	4.3	15	77	18	64	43	0	0	56	0.99
5244--5281	18	2.1	19	95	5	69	42	0	0	57	0.98
6729--6951	111	2.0	112	79	10	242	36	6	9	47	1.62
6825--6865	21	1.9	22	85	5	57	39	2	4	53	1.35
6952--6987	17	2.1	17	89	0	54	41	0	0	58	0.98
9661--9940	144	1.9	144	100	0	560	28	19	17	34	1.95
10842--10868	2	13.5	2	100	0	54	51	0	0	48	1.00
13633--13687	26	2.2	26	93	6	96	41	14	3	40	1.63
14080--14148	23	3.0	23	89	0	93	30	26	23	20	1.98
15659--15719	21	2.9	21	95	2	104	18	27	24	29	1.98
20120--20179	30	2.0	31	90	3	95	30	8	8	53	1.60
21078--21118	20	2.1	20	86	4	57	36	9	4	48	1.58
21840--21899	12	5.0	11	74	21	50	80	1	13	5	0.96
21863--21917	27	2.1	26	83	6	67	72	1	16	9	1.18
23149--23216	24	2.8	24	81	0	82	33	17	19	29	1.95
23156--23232	24	3.2	23	78	10	75	36	19	16	27	1.93
24260--24319	30	2.0	31	83	3	77	28	6	10	55	1.58
25237--25279	20	2.2	20	87	4	61	34	9	6	48	1.62
27092--27151	29	2.0	30	90	6	95	33	6	18	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27242--27286	22	2.0	22	91	0	72	20	40	26	13	1.89
27324--27364	21	2.0	21	100	0	82	12	43	29	14	1.82
27401--27442	21	2.0	21	90	4	68	23	21	26	28	1.99
27470--27509	20	1.9	22	90	10	66	37	37	10	15	1.80
27724--27793	34	2.1	32	89	5	104	31	15	31	21	1.95
29896--30015	60	2.0	60	98	0	231	35	5	20	39	1.76
30008--30076	30	2.2	30	82	15	86	34	5	18	40	1.75
30017--30076	29	2.0	30	90	6	95	33	6	18	41	1.76
30199--30228	15	2.0	15	100	0	60	26	33	26	13	1.93
30189--30250	21	3.2	21	74	25	82	22	41	25	9	1.84
30284--30327	21	2.1	21	95	0	79	13	45	25	15	1.83
30363--30405	21	2.0	21	95	0	77	23	20	27	27	1.99
30687--30756	34	2.1	32	89	5	104	31	15	31	21	1.95
34753--34793	8	5.2	8	82	5	57	34	0	29	36	1.58
34864--35748	128	6.9	128	96	0	1628	23	25	20	31	1.98
36149--36248	33	3.0	34	82	2	130	39	2	4	55	1.30
36768--36861	21	4.5	21	92	5	129	20	26	35	18	1.95
36865--36912	21	2.3	21	85	0	60	22	12	39	25	1.89
38442--38515	17	4.2	17	74	5	58	63	2	0	33	1.09
38635--38723	34	2.7	31	81	6	97	59	2	0	38	1.10
38638--38712	31	2.4	33	77	11	84	60	1	0	38	1.06
38670--38745	34	2.2	35	84	9	95	65	5	0	28	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42521--42573	26	2.2	24	83	10	63	47	3	9	39	1.54
42501--42662	64	2.6	63	78	5	175	47	3	7	41	1.49
42558--42620	29	2.2	29	91	2	101	49	3	7	39	1.48
42586--42700	35	3.2	35	83	3	149	51	2	6	39	1.43
42647--42750	47	2.2	47	84	1	138	49	3	4	42	1.42
42712--42811	11	8.2	11	68	20	56	47	6	3	44	1.43
42694--42816	38	3.2	38	90	2	185	46	4	3	45	1.40
42779--42847	31	2.3	30	82	7	86	46	4	7	42	1.51
42914--42952	3	12.0	3	84	15	51	35	0	2	61	1.10
42914--42980	7	9.4	7	82	12	50	29	1	2	65	1.16
44491--44533	4	10.0	4	85	14	59	27	0	0	72	0.85
44572--44612	2	20.5	2	100	0	82	48	0	0	51	1.00
55885--55973	38	2.3	38	98	0	169	44	3	14	37	1.62
55901--55964	22	3.2	22	60	32	52	42	1	15	40	1.57
57906--57956	15	3.5	15	83	2	59	29	1	0	68	1.00
57906--57943	5	7.6	5	96	0	58	26	0	0	73	0.83
64053--64081	14	2.1	14	93	6	51	37	10	6	44	1.65

Tables:   1

The End!