genome.fa.s3040.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003040.1 Hibiscus syriacus cultivar Beakdansim tig00006323_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128346

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9094--9126	17	1.9	17	100	0	66	18	9	18	54	1.69
11742--11801	21	2.9	21	76	0	66	31	30	20	18	1.96
12308--12346	19	2.1	19	90	0	60	35	2	5	56	1.35
12356--12416	26	2.4	25	78	8	77	21	1	11	65	1.33
12371--12423	17	2.9	18	75	8	54	18	1	16	62	1.42
15405--15483	29	2.7	28	90	3	113	30	27	10	31	1.90
17947--17986	3	13.3	3	94	0	71	32	30	35	2	1.71
21535--21603	29	2.3	30	87	2	95	39	26	5	28	1.79
21553--21632	29	2.8	29	82	0	79	43	22	7	26	1.79
21633--21685	18	3.0	18	97	2	99	11	22	49	16	1.78
28786--28854	29	2.3	30	90	2	104	37	26	7	28	1.83
28801--28870	29	2.4	29	80	0	77	42	21	7	28	1.79
28880--28916	7	5.3	7	93	0	56	32	29	21	16	1.95
33255--33530	137	2.0	137	99	0	543	35	12	17	34	1.88
37696--37795	20	4.9	20	79	7	103	33	22	20	25	1.97
37794--37841	20	2.4	20	92	0	78	43	22	12	20	1.86
37811--37899	20	4.4	20	75	10	74	33	24	13	28	1.93
37812--37891	40	2.0	40	85	7	108	35	25	13	26	1.93
39305--39351	19	2.5	19	92	0	85	51	4	25	19	1.65
40224--40320	46	2.1	46	96	0	176	35	11	28	24	1.90
42918--43009	21	4.5	21	76	2	80	22	17	38	21	1.93
42921--43009	42	2.2	40	85	4	115	23	15	39	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43294--43347	21	2.6	21	84	0	72	35	29	16	18	1.93
43307--43403	21	4.6	21	71	10	56	31	35	12	20	1.90
43584--43682	42	2.4	42	82	0	117	19	17	34	29	1.94
45167--45210	20	2.2	20	95	0	79	54	18	18	9	1.69
45216--45258	20	2.2	20	86	0	59	13	16	20	48	1.80
45593--45651	22	2.7	22	91	0	91	20	18	40	20	1.91
45794--45842	20	2.5	20	93	0	80	20	12	22	44	1.84
45833--45899	20	3.3	20	85	0	80	23	17	20	37	1.94
46744--46957	76	2.9	75	81	7	242	28	1	11	57	1.45
47551--47592	17	2.4	18	88	4	59	21	4	0	73	1.01
47642--47691	19	2.5	20	81	12	59	22	10	0	68	1.19
49785--49815	12	2.6	12	100	0	62	54	6	9	29	1.57
52474--52507	15	2.3	15	89	0	50	38	11	14	35	1.83
55957--56178	117	1.9	118	84	6	299	28	14	8	48	1.73
61518--61580	21	2.9	21	80	4	72	19	25	34	20	1.96
71921--72022	5	19.8	5	73	13	82	21	4	1	71	1.15
71925--71964	21	2.0	20	90	5	62	20	5	0	75	0.99
73673--73857	72	2.6	70	84	8	223	29	0	12	56	1.41
75202--75253	19	2.7	19	76	5	61	23	7	0	69	1.14
78046--78085	20	2.0	20	90	4	64	72	0	17	10	1.11
82243--82418	87	2.0	87	98	0	343	50	13	5	30	1.65
83966--84456	139	3.6	135	81	5	515	45	14	12	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85085--85143	21	2.8	22	89	5	86	44	25	10	20	1.83
86715--86923	110	1.9	110	95	0	382	28	25	11	34	1.91
95459--95658	65	3.1	64	79	9	219	32	24	18	25	1.97
98883--99001	41	2.9	41	82	6	159	31	18	15	34	1.92
102035--102080	18	2.6	18	89	0	74	34	26	23	15	1.94
115485--115543	29	2.0	29	83	3	73	32	10	20	37	1.86
115501--115568	29	2.3	30	87	7	95	32	7	22	38	1.81
116077--116116	22	1.9	21	85	10	55	47	2	15	35	1.58
117338--117403	23	2.9	23	86	0	87	18	25	24	31	1.97
118151--118233	22	3.8	22	91	0	121	21	16	15	45	1.85
121738--121779	15	2.8	16	82	10	52	23	2	0	73	0.94
123585--123614	2	15.0	2	100	0	60	0	50	0	50	1.00
123614--123640	2	13.5	2	100	0	54	48	0	0	51	1.00
124408--124437	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!