Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003042.1 Hibiscus syriacus cultivar Beakdansim tig00006330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82414

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1659--1706
20
2.4
20
96
0
87
29
16
22
31
1.96
10334--10434
21
4.8
21
89
4
150
31
29
12
25
1.93
10680--10732
26
2.0
26
100
0
106
43
15
7
33
1.74
15335--15409
2
37.5
2
100
0
150
50
0
0
49
1.00
18259--18323
21
3.4
21
68
24
70
13
30
32
23
1.93
18252--18323
36
2.0
36
97
0
135
16
29
33
20
1.95
18763--18801
19
2.0
20
90
5
62
46
2
15
35
1.60
21233--21290
12
4.8
13
83
12
63
37
0
1
60
1.07
21255--21284
3
10.0
3
100
0
60
33
0
0
66
0.92
23328--23372
19
2.3
20
81
11
58
37
0
2
60
1.09
34670--34747
37
2.1
37
83
7
95
47
1
3
47
1.28
34893--34930
20
1.9
20
88
0
58
21
26
10
42
1.85
35984--36018
18
1.9
18
88
0
52
25
31
20
22
1.98
36595--36661
19
3.7
19
67
18
61
28
26
13
31
1.94
36573--36654
35
2.3
35
97
0
155
28
25
12
34
1.92
38492--38531
16
2.4
18
80
16
50
42
2
0
55
1.13
48643--48715
24
3.0
24
88
4
67
10
15
24
49
1.76
48653--48708
14
4.3
14
82
17
75
8
14
25
51
1.70
48654--48728
24
3.1
23
90
3
96
12
12
21
54
1.69
49456--49530
10
7.7
10
69
21
61
9
12
21
57
1.62
49462--49526
16
4.1
16
95
0
121
7
12
23
56
1.61
49591--49623
16
2.1
16
100
0
66
6
12
24
57
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76112--76138
2
13.5
2
100
0
54
48
0
0
51
1.00
76282--76325
16
2.6
18
79
20
58
59
2
0
38
1.10
77910--77978
2
35.0
2
91
8
115
49
0
1
49
1.09
79032--79066
18
2.1
18
89
10
56
28
2
5
62
1.32

Tables:   1

The End!