Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003043.1 Hibiscus syriacus cultivar Beakdansim tig00006333_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78240

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16397--16527
29
4.7
28
72
14
101
21
22
14
41
1.89
16713--16760
13
3.6
14
77
22
50
72
2
6
18
1.15
16698--16760
6
10.3
6
77
16
51
77
1
4
15
1.01
18163--18215
21
2.5
21
75
0
61
22
20
16
39
1.92
19643--19691
8
6.4
8
81
13
59
75
2
2
20
1.00
19647--19691
14
3.0
15
87
6
56
75
2
2
20
1.01
22310--22345
19
1.9
18
88
5
54
22
25
0
52
1.47
26385--26510
25
5.1
25
87
0
175
37
23
19
20
1.94
36387--36451
32
2.1
32
88
5
98
20
18
38
23
1.93
37138--37249
42
2.7
41
79
6
118
28
22
25
24
1.99
37365--37473
42
2.6
42
82
1
130
31
22
22
22
1.99
37119--37781
215
3.1
215
90
4
1037
30
21
16
31
1.95
39892--39936
2
23.0
2
95
4
83
48
0
0
51
1.00
46344--46406
32
2.0
32
81
6
76
22
17
36
23
1.95
50392--50431
20
2.0
21
90
5
64
27
5
22
45
1.73
51555--51594
21
2.0
20
85
5
53
35
20
22
22
1.96
65165--65199
17
2.0
18
88
5
54
34
0
8
57
1.29
69219--69329
50
2.2
51
82
7
138
46
5
3
44
1.43
71802--72417
308
2.0
308
100
0
1232
31
15
17
34
1.92
72815--72853
2
19.5
2
89
0
60
51
5
0
43
1.24
74579--74604
4
6.5
4
100
0
52
26
0
0
73
0.84
75614--75810
108
1.8
108
100
0
394
43
3
21
31
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77044--77132
22
4.0
22
100
0
178
26
26
26
19
1.99
77352--77411
30
2.0
31
90
3
95
33
23
6
36
1.81
77426--77497
29
2.5
29
93
0
117
38
12
9
38
1.76
77797--77967
67
2.6
67
84
8
199
18
27
25
28
1.98

Tables:   1

The End!