Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003044.1 Hibiscus syriacus cultivar Beakdansim tig00006334_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61711

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3115--3161
4
10.2
5
84
15
50
34
0
2
63
1.06
3115--3161
9
5.1
10
83
16
50
34
0
2
63
1.06
4212--4448
83
2.7
92
83
9
280
28
19
21
30
1.98
5811--5882
37
1.9
37
86
5
101
30
16
12
40
1.86
5982--6073
37
2.5
37
82
3
105
26
21
14
38
1.91
6083--6171
36
2.5
35
81
5
115
25
19
14
40
1.89
5899--6733
101
8.2
101
78
10
501
28
18
12
40
1.88
6286--6373
36
2.5
36
84
1
115
29
18
10
42
1.83
6220--6528
166
1.9
168
84
4
428
28
18
10
42
1.84
6321--6630
65
4.6
65
76
11
286
28
19
10
40
1.86
6461--6560
37
2.8
36
86
3
146
28
19
13
40
1.88
6394--6662
138
1.9
139
88
5
402
28
19
12
39
1.88
6461--6576
36
3.2
34
81
11
133
31
18
12
38
1.87
6538--6735
103
1.9
102
88
3
299
28
18
13
39
1.89
8373--8413
2
21.5
2
85
9
59
51
0
0
48
1.00
8569--8614
19
2.4
19
85
0
56
15
10
0
73
1.08
10012--10037
2
13.0
2
100
0
52
50
0
0
50
1.00
15693--15717
13
1.9
13
100
0
50
0
12
0
88
0.53
18160--18203
22
2.0
22
86
8
63
18
2
13
65
1.36
18164--18211
22
2.1
23
81
11
55
22
2
10
64
1.35
27003--27044
2
21.0
2
100
0
84
50
0
0
50
1.00
30952--31008
20
2.8
20
94
0
96
33
17
22
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31543--31595
22
2.4
21
84
9
70
15
26
26
32
1.95
31556--31598
22
2.0
22
95
0
77
18
25
27
27
1.98
41472--41496
13
1.9
13
100
0
50
16
4
0
80
0.87
50197--50234
19
2.1
18
85
14
51
26
13
0
60
1.33
52652--52848
98
2.0
99
96
1
369
36
6
16
40
1.75
55405--55434
14
2.1
14
93
0
51
60
0
3
36
1.14
58125--58176
26
2.0
26
88
3
79
34
25
13
26
1.93
59273--59319
24
2.0
24
100
0
94
21
31
12
34
1.91
60486--60558
3
24.7
3
86
13
107
30
0
0
69
0.88

Tables:   1

The End!