Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003045.1 Hibiscus syriacus cultivar Beakdansim tig00006338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84829

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
473--514
2
22.0
2
85
9
61
52
0
0
47
1.00
472--513
21
2.0
21
95
0
75
54
0
0
45
0.99
473--517
15
3.1
15
87
6
67
51
0
0
48
1.00
1761--1875
56
2.0
57
93
6
196
26
8
22
41
1.83
1780--1889
56
2.0
56
92
3
186
26
8
23
41
1.82
5562--5592
15
2.1
15
100
0
62
61
6
6
25
1.45
6996--7027
14
2.2
15
94
5
57
56
0
3
40
1.15
7291--7345
21
2.6
21
79
0
65
9
32
40
18
1.82
8785--8821
2
19.0
2
94
5
67
51
0
0
48
1.00
10006--10073
26
2.8
24
76
17
59
73
8
7
10
1.25
10137--10161
2
12.5
2
100
0
50
52
0
0
48
1.00
10267--10297
2
15.5
2
100
0
62
51
0
0
48
1.00
10335--10407
18
3.9
18
76
16
60
69
0
5
24
1.09
10383--10409
3
9.0
3
100
0
54
66
0
0
33
0.92
13306--13366
8
6.6
10
80
14
53
1
18
0
80
0.80
13296--13351
27
2.2
25
87
6
76
1
26
0
71
0.96
13296--13355
8
7.0
8
76
14
57
1
25
0
73
0.93
16908--16956
2
24.5
2
100
0
98
51
0
0
48
1.00
21014--21071
25
2.3
25
87
3
80
32
15
29
22
1.95
21599--21640
20
2.0
21
90
4
68
21
19
4
54
1.62
27775--27827
25
2.1
25
96
0
97
22
16
11
49
1.78
30494--30893
127
3.1
128
87
3
547
25
18
12
43
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30997--31033
16
2.3
16
90
0
56
29
27
8
35
1.85
31080--31115
16
2.2
16
90
0
54
27
11
5
55
1.57
33500--33534
10
3.4
10
92
4
52
54
0
37
8
1.31
36633--36667
2
17.5
2
100
0
70
48
0
0
51
1.00
44382--44478
24
4.0
24
89
0
140
15
16
18
49
1.80
45608--45689
27
3.0
26
73
3
74
19
32
12
35
1.89
47340--47381
15
2.8
15
78
10
50
30
33
4
30
1.78
50548--50678
36
3.6
36
80
8
149
38
19
18
23
1.93
52789--52837
22
2.3
22
82
6
57
34
0
16
48
1.46
52879--53066
60
3.1
58
81
4
178
32
22
5
38
1.78
53606--53768
21
7.8
21
89
6
217
21
36
21
20
1.95
53789--53856
20
3.3
20
76
11
75
20
29
22
27
1.98
53965--54004
20
1.9
21
85
10
55
40
35
10
15
1.80
57095--57163
30
2.2
30
85
15
95
34
5
17
42
1.73
57104--57163
30
2.0
30
93
6
104
33
6
16
43
1.74
57244--57300
21
2.8
20
92
7
96
21
36
19
22
1.95
58797--58829
16
2.1
16
94
0
57
57
24
9
9
1.58
58839--58915
31
2.5
31
100
0
154
27
10
14
48
1.76
58922--59003
16
5.2
16
91
2
132
59
17
10
12
1.60
59719--59755
14
2.6
14
91
0
56
59
16
10
13
1.61
60231--60289
22
2.7
22
79
10
59
49
1
0
49
1.11
60230--60307
26
3.0
26
76
10
70
52
1
0
46
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60341--60386
23
2.0
23
86
0
65
56
2
0
41
1.11
60368--60412
23
2.0
23
86
8
65
48
0
0
51
1.00
60594--60634
19
2.2
19
95
0
73
24
24
29
21
1.99
61716--61754
16
2.5
15
87
4
60
25
0
17
56
1.41
62068--62115
2
24.0
2
100
0
96
50
0
0
50
1.00
73561--73702
7
18.4
7
73
15
77
73
0
18
7
1.06
73552--73684
41
3.3
40
79
13
125
74
0
18
7
1.04
73515--73663
57
2.6
57
83
9
162
72
0
18
9
1.10
73553--73691
56
2.5
55
81
12
162
74
0
17
7
1.04
73604--73702
21
4.4
21
78
13
99
73
0
18
8
1.06
74983--75053
37
1.9
36
88
2
106
39
15
22
22
1.92
75056--75539
55
8.9
55
83
6
537
28
16
25
29
1.97
76696--76734
16
2.5
15
87
4
60
25
0
17
56
1.41
77049--77117
2
34.5
2
100
0
138
49
0
0
50
1.00
82398--82437
11
3.7
11
86
6
55
17
37
22
22
1.94
84107--84150
19
2.2
21
84
8
56
11
13
15
59
1.62

Tables:   1

The End!