genome.fa.s3047.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003047.1 Hibiscus syriacus cultivar Beakdansim tig00006340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59569

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13731--13785	28	1.9	29	82	10	69	50	12	10	25	1.73
17323--17362	21	1.9	21	100	0	80	55	5	7	32	1.50
23373--23412	20	2.0	20	100	0	80	30	35	25	10	1.88
25200--25240	2	20.5	2	100	0	82	48	0	0	51	1.00
25245--25283	19	2.1	19	100	0	78	30	5	15	48	1.66
25423--25471	18	2.7	18	87	0	71	32	6	10	51	1.61
25902--25945	22	2.0	23	86	4	63	36	25	15	22	1.94
27863--28315	199	2.3	198	80	3	487	32	20	10	36	1.88
29030--29083	2	27.0	2	100	0	108	50	0	0	50	1.00
31971--32146	96	1.8	96	91	2	291	25	34	21	18	1.96
32316--32388	16	4.6	16	91	0	110	60	21	8	9	1.54
33056--33102	24	2.0	24	95	0	85	57	23	8	10	1.60
33385--33447	33	1.9	33	83	0	81	28	20	31	19	1.97
34912--35045	68	2.0	68	93	0	232	32	17	18	31	1.95
37528--37625	48	2.0	48	94	0	169	30	18	15	35	1.92
39701--39772	34	2.1	34	100	0	144	30	2	48	18	1.62
58277--58328	20	2.6	20	96	0	95	38	26	13	21	1.90
58318--58415	20	4.8	20	72	3	70	35	23	19	21	1.96
58382--58576	20	9.7	20	76	8	78	35	25	19	18	1.95
58382--58576	40	4.9	39	82	3	201	35	25	19	18	1.95
58382--58576	60	3.2	60	82	0	246	35	25	19	18	1.95
58942--59009	31	2.2	32	89	2	102	11	22	20	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59132--59186	14	3.6	14	73	21	56	40	23	27	9	1.85
59132--59202	33	2.2	33	92	0	115	42	25	23	8	1.82
59198--59295	19	5.7	19	70	22	81	10	24	22	42	1.84
59220--59309	14	5.7	14	74	23	81	8	25	23	42	1.83
59203--59316	33	3.5	33	93	1	203	9	24	21	44	1.82

Tables:   1

The End!