Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003048.1 Hibiscus syriacus cultivar Beakdansim tig00006351_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57607

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66--107
19
2.3
19
91
4
68
30
4
19
45
1.71
149--199
20
2.5
20
93
0
84
17
11
23
47
1.81
2156--2211
24
2.3
24
96
0
103
26
17
17
37
1.93
3249--3294
20
2.2
21
84
3
58
36
4
19
39
1.72
6031--6075
23
2.0
23
86
0
63
15
8
22
53
1.69
6104--6168
32
2.0
32
100
0
130
21
12
15
50
1.76
7117--7158
2
21.0
2
95
0
75
47
0
2
50
1.14
10527--10617
46
2.0
46
100
0
182
42
10
10
35
1.75
12723--12772
24
2.0
24
84
3
64
54
0
2
44
1.11
14638--14680
13
3.2
13
86
3
59
69
2
2
25
1.12
17720--17810
31
2.9
32
75
6
96
27
18
17
36
1.94
18820--18935
21
5.6
21
75
10
103
27
24
20
27
1.99
21093--21223
32
4.1
32
87
0
163
37
19
12
29
1.90
22361--22410
20
2.5
20
80
3
66
26
26
20
28
1.99
22466--22517
20
2.6
20
87
0
77
21
23
21
34
1.97
27402--27442
20
2.0
21
85
4
57
56
4
7
31
1.48
28209--28235
14
1.9
14
100
0
54
33
7
7
51
1.58
30508--30551
22
1.9
24
90
9
74
34
4
9
52
1.54
40249--40298
19
2.7
19
76
14
59
32
2
0
66
1.03
40404--40464
22
2.7
23
80
7
72
32
18
18
31
1.94
44247--44747
55
9.1
55
92
0
826
27
23
16
32
1.96
45671--45721
8
6.5
8
88
4
68
11
7
0
80
0.90

Tables:   1

The End!