Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003049.1 Hibiscus syriacus cultivar Beakdansim tig00006352_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118299

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2856--2915
28
2.1
29
96
3
113
28
10
18
43
1.82
5177--5211
17
2.0
18
94
5
63
28
5
5
60
1.43
8739--8776
18
2.1
18
95
0
67
26
18
10
44
1.82
9536--9567
2
16.5
2
93
6
57
53
0
0
46
1.00
9538--9568
15
2.1
15
100
0
62
54
0
0
45
0.99
9536--9572
19
1.9
19
94
0
65
56
0
0
43
0.99
10340--10380
18
2.3
18
91
0
64
51
34
4
9
1.56
19278--19302
2
12.5
2
100
0
50
52
0
0
48
1.00
29205--29341
21
6.6
21
87
5
197
31
23
20
24
1.98
29225--29360
62
2.2
62
95
0
245
33
21
20
25
1.97
29350--29416
21
3.2
21
79
8
82
25
23
23
26
2.00
29205--29360
83
1.9
83
89
4
244
32
22
20
25
1.98
29225--29402
62
2.9
62
86
5
200
31
21
21
25
1.98
29205--29402
83
2.4
83
83
8
208
30
22
21
25
1.98
29541--29574
6
5.7
6
92
0
59
35
47
17
0
1.48
30060--30088
6
5.0
6
95
4
51
0
17
51
31
1.45
35612--35671
17
3.4
17
71
24
61
55
5
11
28
1.57
35614--35686
36
2.0
36
100
0
146
50
5
10
32
1.60
36877--36930
26
2.0
27
82
10
67
37
1
0
61
1.07
37077--37236
80
2.0
80
100
0
320
32
6
12
48
1.66
38643--38696
21
2.6
21
75
0
63
37
24
12
25
1.91
42103--42136
14
2.4
14
90
0
50
67
2
0
29
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50064--50112
5
9.8
5
100
0
98
0
59
0
40
0.98
62222--62260
9
4.4
9
93
6
71
56
23
0
20
1.42
62226--62259
17
2.0
17
100
0
68
58
17
0
23
1.38
64536--64598
20
2.9
21
79
9
65
15
25
34
23
1.95
70885--70959
24
3.1
24
90
0
114
12
12
21
54
1.69
70884--70939
14
4.3
14
78
17
75
8
14
25
51
1.70
71489--71534
18
2.6
18
89
0
65
28
6
21
43
1.77
71918--71968
16
3.3
16
89
5
79
11
9
17
60
1.57
72454--72588
59
2.3
60
83
3
166
31
14
15
39
1.87
78520--78561
20
2.1
20
86
0
57
38
7
2
52
1.42
89966--89999
17
2.1
16
88
5
50
52
0
2
44
1.16
91597--91666
20
3.4
20
77
11
70
30
27
14
28
1.95
91597--91646
22
2.4
20
86
6
64
30
30
14
26
1.94
91933--91979
22
2.2
22
85
11
62
51
4
0
44
1.21
91989--92045
26
2.2
26
83
0
69
50
5
3
40
1.42
99065--99150
29
3.0
29
96
0
163
13
34
30
20
1.92
99268--99342
33
2.3
33
86
4
98
10
38
24
26
1.88
99409--99466
29
2.0
29
86
0
80
24
27
34
13
1.93
106619--106684
33
2.0
34
90
3
107
39
21
9
30
1.84
108449--108474
12
2.2
12
100
0
52
7
11
30
50
1.67
112394--112423
11
2.7
11
94
0
51
86
0
13
0
0.57

Tables:   1

The End!