genome.fa.s3050.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003050.1 Hibiscus syriacus cultivar Beakdansim tig00006353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135872

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1237--1289	20	2.8	20	94	5	92	0	18	37	43	1.51
16326--16764	225	1.9	227	86	7	635	30	12	16	39	1.87
17055--17134	39	2.1	38	92	2	133	35	21	17	26	1.95
17121--17166	18	2.6	18	89	3	67	28	28	8	34	1.87
23119--23189	28	2.5	28	93	0	124	39	5	22	32	1.77
24207--24237	3	10.3	3	100	0	62	32	0	0	67	0.91
26021--26103	29	2.8	29	90	1	130	42	10	14	32	1.80
30801--30852	21	2.5	21	93	0	86	32	9	11	46	1.73
36946--36978	17	1.9	17	93	0	57	66	0	0	33	0.92
39403--39430	2	14.0	2	100	0	56	50	0	50	0	1.00
39552--39596	2	22.5	2	100	0	90	51	0	0	48	1.00
39770--39820	15	3.4	15	97	0	93	21	43	5	29	1.76
40334--40683	59	5.9	59	90	1	531	28	20	14	37	1.91
41044--41233	95	2.0	95	88	1	281	25	23	17	34	1.96
44255--44295	16	2.6	16	96	0	73	24	19	24	31	1.98
46277--46729	55	8.3	54	85	4	590	26	19	19	34	1.96
46277--46729	109	4.1	108	88	5	624	26	19	19	34	1.96
46277--46729	166	2.8	163	85	4	590	26	19	19	34	1.96
46277--46729	220	2.1	218	87	3	651	26	19	19	34	1.96
47078--47129	19	2.5	22	77	20	58	30	21	17	30	1.96
47153--47201	19	2.5	20	83	3	64	22	28	16	32	1.95
51268--51487	95	2.3	94	84	5	275	35	15	23	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51896--52304	79	5.3	74	81	9	416	37	11	24	26	1.89
52055--52276	45	5.4	45	69	23	193	36	11	24	28	1.90
51998--52330	79	4.2	79	88	0	497	36	12	23	27	1.90
51998--52330	157	2.1	156	90	2	515	36	12	23	27	1.90
53871--54327	55	8.3	55	84	3	582	27	19	19	33	1.96
53871--54321	109	4.1	110	86	4	574	27	19	19	33	1.96
53871--54321	164	2.7	164	87	4	617	27	19	19	33	1.96
54666--54719	22	2.7	19	78	18	56	31	18	14	35	1.91
54666--54719	19	2.6	22	78	18	62	31	18	14	35	1.91
57124--57159	18	2.0	18	94	0	63	19	5	41	33	1.75
57597--57695	22	4.6	22	75	9	87	26	18	20	35	1.95
62809--62986	90	2.0	89	85	5	243	40	22	8	28	1.84
68921--68971	17	3.2	17	72	10	54	58	0	13	27	1.36
70339--70695	2	185.5	2	67	25	141	39	2	7	50	1.42
70341--70781	7	63.1	7	68	21	152	39	2	6	52	1.39
70338--70778	5	88.2	5	67	22	141	39	2	6	52	1.39
70380--70779	57	6.9	60	68	22	116	39	2	6	52	1.38
70726--70779	23	2.5	22	85	8	76	38	1	0	59	1.08
70727--70784	29	1.9	29	86	13	82	37	1	0	60	1.07
74794--74857	21	3.0	21	90	0	101	39	35	14	10	1.81
84098--84122	2	12.5	2	100	0	50	48	0	0	52	1.00
88028--88202	9	19.0	9	69	25	68	40	1	4	54	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88028--88202	25	6.9	25	67	20	71	40	1	4	54	1.28
88104--88205	28	3.8	27	75	20	88	37	0	1	60	1.08
88133--88203	3	24.3	3	76	21	71	36	0	0	63	0.95
91230--91272	16	2.8	16	96	3	79	39	6	11	41	1.68
95682--95774	12	7.8	12	71	13	57	50	17	13	18	1.78
95681--95788	24	4.5	24	76	9	112	49	16	15	18	1.81
95680--95788	48	2.3	48	87	3	148	49	16	15	18	1.80
98258--98323	18	3.6	18	87	4	87	13	19	48	18	1.81
100171--100265	49	2.0	45	92	8	154	31	30	6	31	1.82
100287--100342	24	2.3	24	76	11	69	51	16	12	19	1.75
102805--102844	13	3.2	13	82	7	55	22	22	37	17	1.94
102832--102880	13	4.0	13	82	12	68	12	14	48	24	1.77
104435--104499	32	2.0	32	82	14	80	44	13	7	33	1.73
104186--104685	198	2.5	194	86	4	689	46	10	5	38	1.62
104550--104682	32	4.2	32	74	7	110	47	9	5	38	1.58
104757--104791	17	2.1	17	88	0	52	22	14	14	48	1.79
105147--105191	23	2.0	23	100	0	90	35	17	20	26	1.95
112951--113030	26	3.1	26	94	0	142	21	13	28	36	1.92
115261--115313	21	2.5	21	93	0	88	35	22	7	33	1.83
120507--120560	26	2.1	26	96	0	99	20	12	29	37	1.90
128892--128931	21	1.9	21	85	10	55	35	10	2	52	1.48
132582--132647	33	2.0	33	85	5	89	42	12	4	40	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132656--132680	12	2.1	12	100	0	50	40	16	0	44	1.47
132678--132729	2	27.5	2	77	11	56	48	1	0	50	1.12

Tables:   1

The End!