genome.fa.s3051.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003051.1 Hibiscus syriacus cultivar Beakdansim tig00006360_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69219

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1465--1509	18	2.5	18	96	0	81	31	33	17	17	1.94
2300--2359	24	2.5	24	100	0	120	21	25	18	35	1.96
5344--5407	21	2.9	22	90	6	87	31	26	25	17	1.97
5353--5407	21	2.6	21	97	0	101	30	29	25	14	1.95
5421--5472	18	2.9	18	94	0	95	28	32	21	17	1.96
7318--7352	18	1.9	18	94	0	61	20	22	31	25	1.98
9647--9730	29	2.8	29	75	12	73	32	16	9	41	1.81
10798--10836	7	5.6	7	100	0	78	28	28	0	43	1.55
11351--11470	21	5.7	21	86	3	161	31	25	18	24	1.97
11351--11473	42	2.9	42	91	4	203	31	25	19	23	1.98
11857--11976	21	5.7	21	86	3	161	31	25	18	24	1.97
11857--11979	42	2.9	42	91	4	203	31	25	19	23	1.98
11326--12339	506	2.0	506	100	0	2028	35	21	14	28	1.93
14749--14779	11	2.8	11	100	0	62	74	0	0	25	0.82
16377--16428	18	2.8	18	79	2	59	25	17	11	46	1.81
19840--19876	19	1.9	19	94	0	65	32	29	16	21	1.95
19921--19974	21	2.6	21	80	8	65	29	20	18	31	1.96
20004--20068	20	3.2	20	95	0	112	26	27	20	26	1.99
20220--20275	22	2.5	22	86	8	78	19	37	16	26	1.92
20615--20697	33	2.5	34	88	2	132	20	20	24	34	1.96
20670--20737	20	3.4	20	83	0	73	17	14	23	44	1.86
20685--20740	20	2.8	20	86	0	76	12	14	21	51	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20708--20747	20	2.0	20	90	0	62	12	12	22	52	1.72
22719--22785	20	3.3	20	89	0	89	34	26	16	22	1.95
22719--22893	34	4.7	38	70	12	114	37	24	18	19	1.94
22737--22860	20	6.5	20	76	14	118	34	25	19	20	1.96
22758--22894	34	3.9	34	74	11	130	37	24	20	18	1.94
22753--22895	74	1.9	74	95	0	259	36	24	20	18	1.95
22903--22939	19	1.9	19	94	0	65	5	16	27	51	1.66
22923--23003	33	2.4	33	87	2	108	16	20	22	40	1.91
22975--23023	20	2.5	20	86	0	62	20	18	24	36	1.94
23010--23053	20	2.2	20	100	0	88	13	11	22	52	1.72
23534--23637	21	5.0	21	72	3	84	22	35	17	25	1.95
24940--24990	25	2.0	25	96	0	93	29	1	15	52	1.54
24964--25077	54	2.1	55	85	8	162	30	2	18	48	1.62
25105--25315	34	5.9	34	74	13	172	22	20	22	35	1.96
25140--25397	20	13.9	20	74	14	230	23	20	21	34	1.97
25233--25389	54	2.9	54	89	3	237	21	20	22	35	1.96
25105--25397	74	4.0	74	83	4	317	22	20	21	35	1.96
25570--25612	12	3.7	12	87	3	61	16	6	27	48	1.71
27641--27677	14	2.6	14	91	4	56	8	18	18	54	1.68
27867--27920	24	2.2	24	93	0	90	40	20	18	20	1.91
28722--28889	20	8.3	20	80	10	189	25	20	25	29	1.99
28722--28910	61	3.1	61	92	0	306	23	20	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28722--28889	41	4.2	40	77	11	180	25	20	25	29	1.99
29005--29051	19	2.4	19	82	3	58	25	14	29	29	1.95
29017--29053	19	1.9	19	94	0	65	21	16	29	32	1.95
29485--29530	2	23.0	2	100	0	92	50	0	0	50	1.00
36011--36047	2	18.5	2	100	0	74	51	0	0	48	1.00
37415--37490	3	26.7	3	77	15	81	64	0	2	32	1.07
37556--37604	18	2.7	18	81	12	64	73	0	14	12	1.10
37610--37649	14	2.8	14	96	3	71	72	0	7	20	1.08
37593--37658	23	2.9	22	79	16	64	72	0	7	19	1.08
37645--37678	3	11.3	3	87	0	50	67	2	0	29	1.05
37910--37960	19	2.7	19	75	3	50	72	3	3	19	1.16
37954--37996	3	14.0	3	85	9	52	62	0	2	34	1.08
37950--37986	19	1.9	19	89	10	58	62	0	2	35	1.10
38360--38464	37	2.8	37	89	0	147	36	11	11	40	1.77
41152--41240	38	2.4	37	86	7	135	37	38	11	13	1.81
43417--43449	15	2.1	16	88	11	50	66	3	6	24	1.28
43466--43509	21	2.2	20	84	12	54	72	2	4	20	1.13
44987--45038	24	2.2	25	80	16	65	25	1	3	69	1.16
46342--46406	12	5.2	12	74	20	53	27	4	1	66	1.20
46364--46406	3	14.3	3	80	9	52	25	4	0	69	1.07
46369--46406	16	2.5	15	91	4	58	23	5	0	71	1.07
46364--46406	13	3.1	15	77	16	56	25	4	0	69	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46486--46518	17	1.9	17	88	11	50	33	3	0	63	1.10
46592--46633	20	2.2	19	86	4	57	33	0	2	64	1.07
46491--46725	120	2.0	117	84	7	305	39	7	7	45	1.60
48875--48913	15	2.7	15	88	4	53	20	15	12	51	1.76
55094--55266	76	2.3	75	82	2	211	30	13	23	31	1.94
56560--56615	23	2.5	23	85	2	78	37	12	12	37	1.81
57051--57892	113	7.6	113	88	6	1212	36	14	21	27	1.92
57190--57780	213	2.7	215	92	3	934	36	15	21	27	1.93
57077--57734	326	2.0	326	93	0	1127	35	15	21	27	1.93
59543--59607	12	5.2	12	74	20	53	27	4	1	66	1.20
59565--59607	3	14.3	3	80	9	52	25	4	0	69	1.07
59570--59607	16	2.5	15	91	4	58	23	5	0	71	1.07
59565--59607	13	3.1	15	77	16	56	25	4	0	69	1.07
59798--59839	20	2.2	19	86	4	57	33	0	2	64	1.07
59702--59931	120	1.9	120	82	4	286	38	6	8	46	1.60
60225--60354	64	2.0	64	96	0	242	32	20	8	38	1.83
61190--61233	18	2.4	18	84	3	52	38	0	9	52	1.33
61547--61635	40	2.2	40	97	0	169	65	3	10	21	1.38
62016--62067	15	3.5	15	91	0	86	7	67	17	7	1.39
63203--63269	34	2.0	34	90	0	107	5	31	5	56	1.47
64874--65086	105	2.0	105	92	0	354	34	10	23	30	1.89

Tables:   1

The End!