Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003052.1 Hibiscus syriacus cultivar Beakdansim tig00006362_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 168972
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Found at i:686 original size:23 final size:23
Alignment explanation
Indices: 647--691 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
637 TTTCTTTTCA
* *
647 AAATCTATTTTCTCTTTCAAATG
1 AAATCTATTTTCCCTTTAAAATG
670 AAATC-ATTTTCACCTTTAAAAT
1 AAATCTATTTTC-CCTTTAAAAT
692 TTGAAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.36, C:0.18, G:0.02, T:0.44
Consensus pattern (23 bp):
AAATCTATTTTCCCTTTAAAATG
Found at i:9215 original size:21 final size:21
Alignment explanation
Indices: 9189--9228 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9179 CCGAGTTACC
*
9189 CGCGACGGCCGCAATAGCGTA
1 CGCGACGACCGCAATAGCGTA
*
9210 CGCGACGACCGTAATAGCG
1 CGCGACGACCGCAATAGCG
9229 CCCATGACGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.33, G:0.33, T:0.10
Consensus pattern (21 bp):
CGCGACGACCGCAATAGCGTA
Found at i:10204 original size:18 final size:18
Alignment explanation
Indices: 10163--10208 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
10153 ACATTTGACT
* *
10163 TTATTTATAATTTTTATA
1 TTATTTATAATTTTAAAA
10181 TCTATTTATAATTTTAAAA
1 T-TATTTATAATTTTAAAA
10200 TTATTTATA
1 TTATTTATA
10209 TGACGTATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
TTATTTATAATTTTAAAA
Found at i:12039 original size:14 final size:14
Alignment explanation
Indices: 12008--12072 Score: 76
Period size: 14 Copynumber: 4.6 Consensus size: 14
11998 ACCCAGTCGT
*
12008 CGAGTCAACTCGATC
1 CGAGTCAAC-CCATC
*
12023 TGAGTCAACCCATC
1 CGAGTCAACCCATC
* *
12037 TGAGTCAACTCATC
1 CGAGTCAACCCATC
*
12051 CGAGTCAACTCATC
1 CGAGTCAACCCATC
12065 CGAGTCAA
1 CGAGTCAA
12073 TCTGTTGACT
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
14 38 0.83
15 8 0.17
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (14 bp):
CGAGTCAACCCATC
Found at i:12064 original size:28 final size:29
Alignment explanation
Indices: 12008--12072 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 29
11998 ACCCAGTCGT
*
12008 CGAGTCAACTCGATCTGAGTCAACCCATC
1 CGAGTCAACTCGATCCGAGTCAACCCATC
* *
12037 TGAGTCAACTC-ATCCGAGTCAACTCATC
1 CGAGTCAACTCGATCCGAGTCAACCCATC
12065 CGAGTCAA
1 CGAGTCAA
12073 TCTGTTGACT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 22 0.69
29 10 0.31
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (29 bp):
CGAGTCAACTCGATCCGAGTCAACCCATC
Found at i:15649 original size:15 final size:15
Alignment explanation
Indices: 15599--15649 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
15589 TCTTTTAGGT
15599 GTTTAAGTTAATTGG
1 GTTTAAGTTAATTGG
*
15614 GTCTTTAATATTTAA-TGG
1 G--TTT-A-AGTTAATTGG
15632 GTTTAAGTTAATTGG
1 GTTTAAGTTAATTGG
15647 GTT
1 GTT
15650 AAACAAATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
14 5 0.17
15 8 0.28
16 3 0.10
17 3 0.10
18 5 0.17
19 5 0.17
ACGTcount: A:0.25, C:0.02, G:0.24, T:0.49
Consensus pattern (15 bp):
GTTTAAGTTAATTGG
Found at i:16268 original size:14 final size:14
Alignment explanation
Indices: 16251--16284 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
16241 AAATAAATTT
16251 TATTTTTCAAAAAA
1 TATTTTTCAAAAAA
*
16265 TA-TTTTGAAAAAA
1 TATTTTTCAAAAAA
16278 TATTTTT
1 TATTTTT
16285 ACAATGTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (14 bp):
TATTTTTCAAAAAA
Found at i:16393 original size:21 final size:23
Alignment explanation
Indices: 16348--16395 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
16338 AAAAATTATT
*
16348 TATTATATAAACATAATAAATAA
1 TATTATATAAACATAATAAACAA
*
16371 TATTATA-AAATATAA-AAACAA
1 TATTATATAAACATAATAAACAA
16392 TATT
1 TATT
16396 TTTATTTCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 9 0.39
22 7 0.30
23 7 0.30
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.35
Consensus pattern (23 bp):
TATTATATAAACATAATAAACAA
Found at i:16663 original size:21 final size:21
Alignment explanation
Indices: 16631--16719 Score: 103
Period size: 21 Copynumber: 4.3 Consensus size: 21
16621 AATATGTAAA
16631 TCGC-ATTGCGATTTTCCAAAT
1 TCGCAATT-CGATTTTCCAAAT
16652 TCGCAATTCGATTTTCCAAAT
1 TCGCAATTCGATTTTCCAAAT
**
16673 TCGCAACGCGA-TTTCCAAAT
1 TCGCAATTCGATTTTCCAAAT
* *
16693 TCGCAATACTGAATTT-CAAAT
1 TCGCAATTC-GATTTTCCAAAT
16714 TCGCAA
1 TCGCAA
16720 CGCGAATTTT
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
20 16 0.26
21 39 0.64
22 6 0.10
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (21 bp):
TCGCAATTCGATTTTCCAAAT
Found at i:16688 original size:41 final size:42
Alignment explanation
Indices: 16638--16729 Score: 134
Period size: 41 Copynumber: 2.2 Consensus size: 42
16628 AAATCGCATT
* *
16638 GCGATTTTCCAAATTCGCAATTC-GATTTTCCAAATTCGCAAC
1 GCGATTTTCCAAATTCGCAATACTGAATTT-CAAATTCGCAAC
16680 GCGA-TTTCCAAATTCGCAATACTGAATTTCAAATTCGCAAC
1 GCGATTTTCCAAATTCGCAATACTGAATTTCAAATTCGCAAC
16721 GCGAATTTT
1 GCG-ATTTT
16730 GTTTTCGCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
41 32 0.71
42 10 0.22
43 3 0.07
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (42 bp):
GCGATTTTCCAAATTCGCAATACTGAATTTCAAATTCGCAAC
Found at i:16697 original size:62 final size:62
Alignment explanation
Indices: 16584--16720 Score: 147
Period size: 62 Copynumber: 2.2 Consensus size: 62
16574 CAACGAGAAC
* ** * * *
16584 TCCAATTTCGCAACTCAGTTTTCAAATTCGCAACGCGAATATGTAAATCGCATTGC-GATTT
1 TCCAAATTCGCAACTCAGTTTTCAAATTCGCAACGCGAATATCCAAATCGCAATACTGAATT
* *
16645 TCCAAATTCGCAATTC-GATTTTCCAAATTCGCAACGCG-ATTTCCAAATTCGCAATACTGAATT
1 TCCAAATTCGCAACTCAG-TTTT-CAAATTCGCAACGCGAATATCCAAA-TCGCAATACTGAATT
16708 T-CAAATTCGCAAC
1 TCCAAATTCGCAAC
16721 GCGAATTTTG
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
60 1 0.02
61 24 0.38
62 33 0.52
63 5 0.08
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (62 bp):
TCCAAATTCGCAACTCAGTTTTCAAATTCGCAACGCGAATATCCAAATCGCAATACTGAATT
Found at i:16728 original size:20 final size:20
Alignment explanation
Indices: 16566--16780 Score: 123
Period size: 20 Copynumber: 10.6 Consensus size: 20
16556 AAATGACCAA
* * *
16566 CAAATTCGCAACGAGAACTC
1 CAAATTCGCAACGCGAATTT
* * *
16586 CAATTTCGCAACTC-AGTTTT
1 CAAATTCGCAACGCGA-ATTT
16606 CAAATTCGCAACGCGAATATGT
1 CAAATTCGCAACGCGAAT-T-T
** *
16628 -AAA-TCGCATTGCGATTTT
1 CAAATTCGCAACGCGAATTT
** *
16646 CCAAATTCGCAATTCGATTTT
1 -CAAATTCGCAACGCGAATTT
16667 CCAAATTCGCAACGCG-ATTT
1 -CAAATTCGCAACGCGAATTT
**
16687 CCAAATTCGCAATACTGAATTT
1 -CAAATTCGCAACGC-GAATTT
16709 CAAATTCGCAACGCGAATTT
1 CAAATTCGCAACGCGAATTT
**** * *
16729 TGTTTTCGCAACTCGATTTT
1 CAAATTCGCAACGCGAATTT
* *
16749 CGAATTCGCAACACGAATTT
1 CAAATTCGCAACGCGAATTT
* *
16769 TAATTTCGCAAC
1 CAAATTCGCAAC
16781 AGGTTTTAGT
Statistics
Matches: 151, Mismatches: 35, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
18 1 0.01
19 2 0.01
20 98 0.65
21 45 0.30
22 5 0.03
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.31
Consensus pattern (20 bp):
CAAATTCGCAACGCGAATTT
Found at i:16781 original size:20 final size:20
Alignment explanation
Indices: 16692--16800 Score: 82
Period size: 20 Copynumber: 5.5 Consensus size: 20
16682 GATTTCCAAA
* * *
16692 TTCGCAATACTGAATTTCAAA
1 TTCGCAACAC-GAATTTTAAT
* **
16713 TTCGCAACGCGAATTTTGTT
1 TTCGCAACACGAATTTTAAT
*
16733 TTCGCAACTCG-ATTTTCGAA-
1 TTCGCAACACGAATTTT--AAT
16753 TTCGCAACACGAATTTTAAT
1 TTCGCAACACGAATTTTAAT
* *
16773 TTCGCAACA-G-GTTTTAGT
1 TTCGCAACACGAATTTTAAT
16791 TTCGCAACAC
1 TTCGCAACAC
16801 AAATGTTTTG
Statistics
Matches: 71, Mismatches: 12, Indels: 12
0.75 0.13 0.13
Matches are distributed among these distances:
18 15 0.21
19 8 0.11
20 35 0.49
21 13 0.18
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (20 bp):
TTCGCAACACGAATTTTAAT
Found at i:19120 original size:16 final size:16
Alignment explanation
Indices: 19099--19134 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
19089 ACGTTTGCAT
19099 TTAAAAATCACCTAAG
1 TTAAAAATCACCTAAG
19115 TTAAAAATCACCTAAG
1 TTAAAAATCACCTAAG
19131 TTAA
1 TTAA
19135 TAAGGTGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (16 bp):
TTAAAAATCACCTAAG
Found at i:19292 original size:20 final size:20
Alignment explanation
Indices: 19272--19335 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 20
19262 CGCGAAATCG
*
19272 CAACGCGAATTTGACTTTCG
1 CAACGCGAATTTGACTTTCA
***
19292 CGTTGCGAATTTGACTTTCA
1 CAACGCGAATTTGACTTTCA
***
19312 CGTTGCGAATTTGACTTTCA
1 CAACGCGAATTTGACTTTCA
19332 CAAC
1 CAAC
19336 CATTGCAACG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.34
Consensus pattern (20 bp):
CAACGCGAATTTGACTTTCA
Found at i:19389 original size:29 final size:29
Alignment explanation
Indices: 19316--19390 Score: 132
Period size: 29 Copynumber: 2.6 Consensus size: 29
19306 CTTTCACGTT
* *
19316 GCGAATTTGACTTTCACAACCATTGCAAC
1 GCGAATTTGACTTTCGCAACCATCGCAAC
19345 GCGAATTTGACTTTCGCAACCATCGCAAC
1 GCGAATTTGACTTTCGCAACCATCGCAAC
19374 GCGAATTTGACTTTCGC
1 GCGAATTTGACTTTCGC
19391 GTTGCGAAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (29 bp):
GCGAATTTGACTTTCGCAACCATCGCAAC
Found at i:19555 original size:64 final size:64
Alignment explanation
Indices: 19457--19607 Score: 223
Period size: 64 Copynumber: 2.4 Consensus size: 64
19447 AATTTAAAAC
* *
19457 AACAAATTAACTTTTACAAATTAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTA
* *** * *
19521 AACAAATCAACTTTTACAAATCAATTAAAGAAGCAAAAAATAATTCTTATTTCCTCATCAATTA
1 AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTA
19585 AACAAATCAAC-TTTACAAATCAA
1 AACAAATCAACTTTTACAAATCAA
19608 CTTTTACAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
63 12 0.15
64 67 0.85
ACGTcount: A:0.52, C:0.16, G:0.03, T:0.29
Consensus pattern (64 bp):
AACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTA
Found at i:19602 original size:13 final size:14
Alignment explanation
Indices: 19586--19618 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
19576 CATCAATTAA
19586 ACAAATCAAC-TTT
1 ACAAATCAACTTTT
19599 ACAAATCAACTTTT
1 ACAAATCAACTTTT
19613 ACAAAT
1 ACAAAT
19619 ACATCAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:20991 original size:21 final size:20
Alignment explanation
Indices: 20962--21076 Score: 97
Period size: 21 Copynumber: 5.5 Consensus size: 20
20952 ATGAATCGGG
*
20962 CTCTCGAACGGTGGGAGGGAC
1 CTCTTGAACGGTGGGAGGG-C
* **
20983 CTCTTGAACGATGACAAGGGC
1 CTCTTGAACGGTG-GGAGGGC
21004 CTCTTGAACGGTGGGAGAGGC
1 CTCTTGAACGGTGGGAG-GGC
**
21025 CTCTTGAA-GGATGATAGGGGC
1 CTCTTGAACGG-TGGGA-GGGC
* *
21046 CTCTTGAACGATAGGAGAGGC
1 CTCTTGAACGGTGGGAG-GGC
21067 CTCTTGAACG
1 CTCTTGAACG
21077 ATGACAGGTG
Statistics
Matches: 75, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
20 5 0.07
21 64 0.85
22 6 0.08
ACGTcount: A:0.23, C:0.21, G:0.36, T:0.20
Consensus pattern (20 bp):
CTCTTGAACGGTGGGAGGGC
Found at i:21028 original size:42 final size:42
Alignment explanation
Indices: 20962--21082 Score: 172
Period size: 42 Copynumber: 2.9 Consensus size: 42
20952 ATGAATCGGG
*
20962 CTCTCGAACGGTGGGAG-GGACCTCTTGAACGATGACAAGGGC
1 CTCTTGAACGGTGGGAGAGG-CCTCTTGAACGATGACAAGGGC
* * *
21004 CTCTTGAACGGTGGGAGAGGCCTCTTGAAGGATGATAGGGGC
1 CTCTTGAACGGTGGGAGAGGCCTCTTGAACGATGACAAGGGC
* *
21046 CTCTTGAACGATAGGAGAGGCCTCTTGAACGATGACA
1 CTCTTGAACGGTGGGAGAGGCCTCTTGAACGATGACA
21083 GGTGAATTGG
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
42 68 0.97
43 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.35, T:0.20
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGAGGCCTCTTGAACGATGACAAGGGC
Found at i:21077 original size:21 final size:21
Alignment explanation
Indices: 20982--21078 Score: 99
Period size: 21 Copynumber: 4.6 Consensus size: 21
20972 GTGGGAGGGA
**
20982 CCTCTTGAACGATGACAAG-GG
1 CCTCTTGAACGAT-AGGAGAGG
* *
21003 CCTCTTGAACGGTGGGAGAGG
1 CCTCTTGAACGATAGGAGAGG
* * *
21024 CCTCTTGAAGGAT-GATAGGGG
1 CCTCTTGAACGATAG-GAGAGG
21045 CCTCTTGAACGATAGGAGAGG
1 CCTCTTGAACGATAGGAGAGG
21066 CCTCTTGAACGAT
1 CCTCTTGAACGAT
21079 GACAGGTGAA
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
20 3 0.05
21 58 0.94
22 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.33, T:0.22
Consensus pattern (21 bp):
CCTCTTGAACGATAGGAGAGG
Found at i:22056 original size:16 final size:16
Alignment explanation
Indices: 22037--22080 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
22027 CAAATATCCA
* *
22037 AATATACAAATAATAT
1 AATATACAAACAATAC
22053 AATATACAAACAATAC
1 AATATACAAACAATAC
*
22069 AATACACAAACA
1 AATATACAAACA
22081 TCTGTAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.64, C:0.16, G:0.00, T:0.20
Consensus pattern (16 bp):
AATATACAAACAATAC
Found at i:23253 original size:21 final size:21
Alignment explanation
Indices: 23208--23324 Score: 98
Period size: 21 Copynumber: 5.7 Consensus size: 21
23198 TCTGAAACTT
* *
23208 AAAATCGCAACGCGAA-ATG-
1 AAAATCGCAATGCGAATTTGA
*
23227 AAAATCGCAACGCGAATTTGA
1 AAAATCGCAATGCGAATTTGA
*
23248 AAAATCTCAATGCG-ATTT-A
1 AAAATCGCAATGCGAATTTGA
* * * ** *
23267 CATATTTGCGTTGCGAATTTGG
1 -AAAATCGCAATGCGAATTTGA
*
23289 AAAATCGCAATGCGAATTTGG
1 AAAATCGCAATGCGAATTTGA
23310 AAAATCGCAATGCGA
1 AAAATCGCAATGCGA
23325 TTTACATATT
Statistics
Matches: 78, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
19 17 0.22
20 14 0.18
21 47 0.60
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (21 bp):
AAAATCGCAATGCGAATTTGA
Found at i:23296 original size:62 final size:62
Alignment explanation
Indices: 23226--23353 Score: 211
Period size: 62 Copynumber: 2.1 Consensus size: 62
23216 AACGCGAAAT
* **
23226 GAAAATCGCAACGCGAATTTGAAAAATCTCAATGCGATTTACATATTTGCGTTGCGAATTTG
1 GAAAATCGCAACGCGAATTTGAAAAATCGCAATGCGATTTACATATTCACGTTGCGAATTTG
* *
23288 GAAAATCGCAATGCGAATTTGGAAAATCGCAATGCGATTTACATATTCACGTTGCGAATTTG
1 GAAAATCGCAACGCGAATTTGAAAAATCGCAATGCGATTTACATATTCACGTTGCGAATTTG
23350 GAAA
1 GAAA
23354 CTGAGTTGCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (62 bp):
GAAAATCGCAACGCGAATTTGAAAAATCGCAATGCGATTTACATATTCACGTTGCGAATTTG
Found at i:23434 original size:20 final size:20
Alignment explanation
Indices: 23393--23434 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
23383 GAATTCGAGA
* * *
23393 TCGTGTTGCGATTTTCATTT
1 TCGTGTTGCGAATTTAAGTT
23413 TCGTGTTGCGAATTTAAGTT
1 TCGTGTTGCGAATTTAAGTT
23433 TC
1 TC
23435 AAATAGTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.50
Consensus pattern (20 bp):
TCGTGTTGCGAATTTAAGTT
Found at i:24007 original size:20 final size:20
Alignment explanation
Indices: 23984--24035 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
23974 TTTGACTTCT
23984 GTGTTGCGAATTACAAATTC
1 GTGTTGCGAATTACAAATTC
* *
24004 GTGTTGCGATTTACAGATTC
1 GTGTTGCGAATTACAAATTC
*
24024 GCGTTGCGAATT
1 GTGTTGCGAATT
24036 TGGAAAATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.37
Consensus pattern (20 bp):
GTGTTGCGAATTACAAATTC
Found at i:29209 original size:13 final size:13
Alignment explanation
Indices: 29191--29216 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29181 AAGAAAGTCA
29191 ACGGTCAACGGTC
1 ACGGTCAACGGTC
29204 ACGGTCAACGGTC
1 ACGGTCAACGGTC
29217 GGGTCGGGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (13 bp):
ACGGTCAACGGTC
Found at i:29228 original size:17 final size:17
Alignment explanation
Indices: 29206--29246 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
29196 CAACGGTCAC
29206 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
29223 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
29240 GGTCAAC
1 GGTCAAC
29247 CCGGTTCAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.15, C:0.24, G:0.44, T:0.17
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:29233 original size:7 final size:7
Alignment explanation
Indices: 29187--29216 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
29177 GTCAAAGAAA
29187 GTCAACG
1 GTCAACG
29194 GTCAACG
1 GTCAACG
29201 GTC-ACG
1 GTCAACG
29207 GTCAACG
1 GTCAACG
29214 GTC
1 GTC
29217 GGGTCGGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (7 bp):
GTCAACG
Found at i:29282 original size:20 final size:19
Alignment explanation
Indices: 29240--29291 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
29230 GGTCGGGTCG
* *
29240 GGTCAACCCGGTTCAGACC
1 GGTCAAACCGGTTCAAACC
*
29259 GGTCAAACCGGTTCAAAACT
1 GGTCAAACCGGTTC-AAACC
*
29279 GGTCAAACTGGTT
1 GGTCAAACCGGTT
29292 TTCCAGCAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (19 bp):
GGTCAAACCGGTTCAAACC
Found at i:36494 original size:13 final size:14
Alignment explanation
Indices: 36472--36508 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
36462 GTCAAAGAAA
36472 GTCAACGGTCAACG
1 GTCAACGGTCAACG
36486 GTC-ACGGTCAACG
1 GTCAACGGTCAACG
36499 GTCAACGGTC
1 GTCAACGGTC
36509 GGGTCGGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.16
Consensus pattern (14 bp):
GTCAACGGTCAACG
Found at i:36525 original size:7 final size:7
Alignment explanation
Indices: 36472--36508 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
36462 GTCAAAGAAA
36472 GTCAACG
1 GTCAACG
36479 GTCAACG
1 GTCAACG
36486 GTC-ACG
1 GTCAACG
36492 GTCAACG
1 GTCAACG
36499 GTCAACG
1 GTCAACG
36506 GTC
1 GTC
36509 GGGTCGGGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.21
7 23 0.79
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.16
Consensus pattern (7 bp):
GTCAACG
Found at i:36531 original size:16 final size:17
Alignment explanation
Indices: 36498--36554 Score: 98
Period size: 17 Copynumber: 3.4 Consensus size: 17
36488 CACGGTCAAC
36498 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
36515 GGTCAACGGTC-GGTCG
1 GGTCAACGGTCGGGTCG
*
36531 GGTCAACAGTCGGGTCG
1 GGTCAACGGTCGGGTCG
36548 GGTCAAC
1 GGTCAAC
36555 CCGGTTCAGA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
16 15 0.39
17 23 0.61
ACGTcount: A:0.16, C:0.25, G:0.42, T:0.18
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:36572 original size:19 final size:19
Alignment explanation
Indices: 36548--36618 Score: 106
Period size: 19 Copynumber: 3.7 Consensus size: 19
36538 AGTCGGGTCG
*
36548 GGTCAACCCGGTTCAGACC
1 GGTCAAACCGGTTCAGACC
36567 GGTCAAACCGGTTCAGACC
1 GGTCAAACCGGTTCAGACC
* *
36586 GGTCAAACCGGTTCAAAACT
1 GGTCAAACCGGTTC-AGACC
36606 GGTCAAACCGGTT
1 GGTCAAACCGGTT
36619 TTCCAGCAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
19 32 0.67
20 16 0.33
ACGTcount: A:0.27, C:0.30, G:0.25, T:0.18
Consensus pattern (19 bp):
GGTCAAACCGGTTCAGACC
Found at i:36586 original size:10 final size:10
Alignment explanation
Indices: 36550--36618 Score: 72
Period size: 9 Copynumber: 7.1 Consensus size: 10
36540 TCGGGTCGGG
*
36550 TCAACCCGGT
1 TCAAACCGGT
*
36560 TCAGACCGG-
1 TCAAACCGGT
36569 TCAAACCGGT
1 TCAAACCGGT
*
36579 TCAGACCGG-
1 TCAAACCGGT
36588 TCAAACCGGT
1 TCAAACCGGT
*
36598 TCAAAACTGG-
1 TC-AAACCGGT
36608 TCAAACCGGT
1 TCAAACCGGT
36618 T
1 T
36619 TTCCAGCAGC
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
9 22 0.46
10 20 0.42
11 6 0.12
ACGTcount: A:0.28, C:0.30, G:0.23, T:0.19
Consensus pattern (10 bp):
TCAAACCGGT
Found at i:39174 original size:19 final size:19
Alignment explanation
Indices: 39120--39175 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 19
39110 ACTTTGTAGA
39120 CTTTAAGGAACTCTGGA-G
1 CTTTAAGGAACTCTGGAGG
** * * *
39138 -AATAAGGAGCTTTTGAGG
1 CTTTAAGGAACTCTGGAGG
39156 CTTTAAGGAACTCTGGAGG
1 CTTTAAGGAACTCTGGAGG
39175 C
1 C
39176 ATCAAGACTC
Statistics
Matches: 26, Mismatches: 10, Indels: 3
0.67 0.26 0.08
Matches are distributed among these distances:
17 11 0.42
18 1 0.04
19 14 0.54
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (19 bp):
CTTTAAGGAACTCTGGAGG
Found at i:43896 original size:35 final size:35
Alignment explanation
Indices: 43863--43954 Score: 75
Period size: 35 Copynumber: 2.7 Consensus size: 35
43853 TATCTTTTAA
** *
43863 TTTAAAATATTTAAAAATATATTGATATTTTTTAA
1 TTTAAAATATTTAAAAATATATAAATATATTTTAA
*
43898 TAGTT--AA-ATTTAAAAAGATAATAAATATATTTTAA
1 T--TTAAAATATTTAAAAATAT-ATAAATATATTTTAA
* *
43933 TTTAAAAT-TTTCAAAAGATATA
1 TTTAAAATATTTAAAAATATATA
43955 CAACTCATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
33 2 0.04
34 14 0.30
35 28 0.61
37 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.04, T:0.45
Consensus pattern (35 bp):
TTTAAAATATTTAAAAATATATAAATATATTTTAA
Found at i:46410 original size:20 final size:20
Alignment explanation
Indices: 46374--46424 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
46364 ATCCATTCAT
46374 ATATTGTTTTA-TTTTTTTA
1 ATATTGTTTTATTTTTTTTA
46393 ATATTGTTTTATTTTTTTTA
1 ATATTGTTTTATTTTTTTTA
* *
46413 ATGTTTTTTTAT
1 ATATTGTTTTAT
46425 CTATACCTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 11 0.38
20 18 0.62
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.75
Consensus pattern (20 bp):
ATATTGTTTTATTTTTTTTA
Found at i:47592 original size:6 final size:6
Alignment explanation
Indices: 47581--47607 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
47571 GGCTTTCAAA
47581 CTCCCT CTCCCT CTCCCT CTCCCT CTC
1 CTCCCT CTCCCT CTCCCT CTCCCT CTC
47608 TTGAACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (6 bp):
CTCCCT
Found at i:49581 original size:18 final size:20
Alignment explanation
Indices: 49556--49604 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
49546 AAAAATCATG
49556 AATATTATATT-T-TTAAAA
1 AATATTATATTCTATTAAAA
* *
49574 ATTATTATTTTCTATTAAAA
1 AATATTATATTCTATTAAAA
*
49594 AATATTTTATT
1 AATATTATATT
49605 ATTCTATTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 9 0.38
19 1 0.04
20 14 0.58
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
AATATTATATTCTATTAAAA
Found at i:49609 original size:23 final size:21
Alignment explanation
Indices: 49570--49612 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
49560 TTATATTTTT
49570 AAAAATTATTATTTTCTATTA
1 AAAAATTATTATTTTCTATTA
*
49591 AAAAATATTTTATTATTCTATT
1 AAAAAT-TATTATT-TTCTATT
49613 TACAGCATCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 6 0.32
23 7 0.37
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (21 bp):
AAAAATTATTATTTTCTATTA
Found at i:50410 original size:2 final size:2
Alignment explanation
Indices: 50405--50487 Score: 105
Period size: 2 Copynumber: 40.5 Consensus size: 2
50395 AAAATATACG
* * *
50405 TA TA TA TA TA TA TA TG TA TA TCA TT TGA -A GTA AA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA T-A TA T-A TA -TA TA TA TA TA TA
50447 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
50488 GAAATTTATT
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
1 1 0.01
2 67 0.94
3 3 0.04
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (2 bp):
TA
Found at i:68425 original size:28 final size:29
Alignment explanation
Indices: 68385--68440 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
68375 ATCATTTTAC
68385 CAGTCGGCTCAA-TTTTGATTGTACAAAA
1 CAGTCGGCTCAATTTTTGATTGTACAAAA
68413 CAGTCGGCTCAATTTTTGATTGTACAAA
1 CAGTCGGCTCAATTTTTGATTGTACAAA
68441 CAATATGGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 12 0.44
29 15 0.56
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (29 bp):
CAGTCGGCTCAATTTTTGATTGTACAAAA
Found at i:68450 original size:29 final size:28
Alignment explanation
Indices: 68388--68444 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
68378 ATTTTACCAG
*
68388 TCGGCTCAATTTTGATTGTACAAAACAG
1 TCGGCTCAATTTTGATTGTACAAAACAA
68416 TCGGCTCAATTTTTGATTGTAC-AAACAA
1 TCGGCTCAA-TTTTGATTGTACAAAACAA
68444 T
1 T
68445 ATGGCTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 15 0.56
29 12 0.44
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35
Consensus pattern (28 bp):
TCGGCTCAATTTTGATTGTACAAAACAA
Found at i:70071 original size:8 final size:8
Alignment explanation
Indices: 70060--70107 Score: 69
Period size: 8 Copynumber: 5.8 Consensus size: 8
70050 AAGAAAAGGA
70060 AAAAAATG
1 AAAAAATG
70068 AAAAAATG
1 AAAAAATG
*
70076 AAAAAAAATA
1 --AAAAAATG
70086 AAAAAATG
1 AAAAAATG
70094 AAAAAATG
1 AAAAAATG
70102 AAAAAA
1 AAAAAA
70108 AGAAGAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
8 29 0.81
10 7 0.19
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:70116 original size:8 final size:8
Alignment explanation
Indices: 70047--70142 Score: 77
Period size: 9 Copynumber: 11.2 Consensus size: 8
70037 ATTTTGCTTG
70047 AAGAAGAAA
1 AAGAA-AAA
*
70056 AGGAAAAA
1 AAGAAAAA
70064 AATGAAAAA
1 AA-GAAAAA
*
70073 ATGAAAAAA
1 AAG-AAAAA
*
70082 AATAAAAA
1 AAGAAAAA
70090 AATGAAAAA
1 AA-GAAAAA
*
70099 ATGAAAAA
1 AAGAAAAA
70107 AAGAAGAAA
1 AAGAA-AAA
70116 AA-ATAAAA
1 AAGA-AAAA
*
70124 AGGAAAAA
1 AAGAAAAA
70132 AAGAGAAAA
1 AAGA-AAAA
70141 AA
1 AA
70143 AGTAAAGAAA
Statistics
Matches: 70, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
8 34 0.49
9 36 0.51
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (8 bp):
AAGAAAAA
Found at i:70133 original size:35 final size:35
Alignment explanation
Indices: 70053--70154 Score: 115
Period size: 35 Copynumber: 2.9 Consensus size: 35
70043 CTTGAAGAAG
*
70053 AAAAGG-AAAAAAATGAAAAAATGAA-AAAAAATA
1 AAAAGGAAAAAAAATGAAAAAAAGAAGAAAAAATA
70086 AAAA--AATGAAAAAATGAAAAAAAGAAGAAAAAATA
1 AAAAGGAA--AAAAAATGAAAAAAAGAAGAAAAAATA
70121 AAAAGGAAAAAAAGA-GAAAAAAAGTAAAGAAAAA
1 AAAAGGAAAAAAA-ATGAAAAAAAG--AAGAAAAA
70155 GGAGGTCTCA
Statistics
Matches: 59, Mismatches: 1, Indels: 14
0.80 0.01 0.19
Matches are distributed among these distances:
32 1 0.02
33 4 0.07
34 17 0.29
35 26 0.44
36 1 0.02
37 10 0.17
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (35 bp):
AAAAGGAAAAAAAATGAAAAAAAGAAGAAAAAATA
Found at i:70148 original size:26 final size:27
Alignment explanation
Indices: 70053--70143 Score: 120
Period size: 26 Copynumber: 3.5 Consensus size: 27
70043 CTTGAAGAAG
70053 AAAAG-GAAAAAAATGAAAAAATGAAA
1 AAAAGAGAAAAAAATGAAAAAATGAAA
*
70079 AAAA-ATAAAAAAATGAAAAAATGAAA
1 AAAAGAGAAAAAAATGAAAAAATGAAA
*
70105 AAAAGA-AGAAAAAAT--AAAAAGGAAA
1 AAAAGAGA-AAAAAATGAAAAAATGAAA
70130 AAAAGAGAAAAAAA
1 AAAAGAGAAAAAAA
70144 GTAAAGAAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
25 21 0.36
26 30 0.51
27 8 0.14
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (27 bp):
AAAAGAGAAAAAAATGAAAAAATGAAA
Found at i:70154 original size:24 final size:25
Alignment explanation
Indices: 70060--70142 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 25
70050 AAGAAAAGGA
*
70060 AAAAAATGAAAAAATGAAAAAAAA-TA-
1 AAAAAAT--AAAAA-GAAAAAAAAGAAG
70086 AAAAAATGAAAAA-ATGAAAAAAAGAAG
1 AAAAAAT-AAAAAGA--AAAAAAAGAAG
*
70113 AAAAAATAAAAAGGAAAAAAAG-AG
1 AAAAAATAAAAAGAAAAAAAAGAAG
70137 AAAAAA
1 AAAAAA
70143 AGTAAAGAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
23 1 0.02
24 8 0.16
25 20 0.41
26 13 0.27
27 7 0.14
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (25 bp):
AAAAAATAAAAAGAAAAAAAAGAAG
Found at i:72091 original size:14 final size:14
Alignment explanation
Indices: 72072--72098 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
72062 ACTTTTCTGT
72072 TTTTCTTAGTTTAG
1 TTTTCTTAGTTTAG
72086 TTTTCTTAGTTTA
1 TTTTCTTAGTTTA
72099 CGCGCATTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.07, G:0.11, T:0.67
Consensus pattern (14 bp):
TTTTCTTAGTTTAG
Found at i:75720 original size:20 final size:19
Alignment explanation
Indices: 75678--75721 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
75668 AGTAATTTAA
*
75678 GTATCGATACCAAGGGTGG
1 GTATCGATACCAAGGGTGC
*
75697 GTATCGATACCCAAGGGTTC
1 GTATCGATA-CCAAGGGTGC
75717 GTATC
1 GTATC
75722 AATATCGAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (19 bp):
GTATCGATACCAAGGGTGC
Found at i:81708 original size:77 final size:78
Alignment explanation
Indices: 81578--81725 Score: 185
Period size: 77 Copynumber: 1.9 Consensus size: 78
81568 TTAATAAATT
* * ***
81578 TCTTATTTAATTAATTCAAATTAAATATACATTAAAGACTTATAATTTGAATTACAATC-TTTAA
1 TCTTATTTAATTAATTCAAATTAAATATACATTAAAAAATTATAATCAAAATTACAATCTTTTAA
81642 TGTTTATTTAAAA
66 TGTTTATTTAAAA
* * *
81655 TCTTATTTAATT-ATTCCGAATTAAATAT-CAATTAAAAAATTGTAATCAAAATTACATTCTTTT
1 TCTTATTTAATTAATT-CAAATTAAATATAC-ATTAAAAAATTATAATCAAAATTACAATCTTTT
81718 AATGTTTA
64 AATGTTTA
81726 ATTACTATAG
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
76 4 0.07
77 45 0.75
78 11 0.18
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (78 bp):
TCTTATTTAATTAATTCAAATTAAATATACATTAAAAAATTATAATCAAAATTACAATCTTTTAA
TGTTTATTTAAAA
Found at i:100198 original size:21 final size:21
Alignment explanation
Indices: 100157--100198 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
100147 GTTAGATATT
* *
100157 TTTTCTACTTTCAATCGTTTA
1 TTTTCTACTATCAATCATTTA
100178 TTTTCTA-TATCAACTCATTTA
1 TTTTCTACTATCAA-TCATTTA
100199 AACACATACA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.24, C:0.19, G:0.02, T:0.55
Consensus pattern (21 bp):
TTTTCTACTATCAATCATTTA
Found at i:101019 original size:25 final size:25
Alignment explanation
Indices: 100972--101018 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
100962 TGTTTCTACG
100972 TTTTGTTCTACAAAATATTTTTTGT
1 TTTTGTTCTACAAAATATTTTTTGT
* *
100997 TTTTGTT-TTCAAATTATTTTTT
1 TTTTGTTCTACAAAATATTTTTT
101019 TTCAATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.66
Consensus pattern (25 bp):
TTTTGTTCTACAAAATATTTTTTGT
Found at i:116031 original size:21 final size:21
Alignment explanation
Indices: 116005--116051 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
115995 ACGCTATCAT
116005 ACGCCTTCTCAAGGTCAATGA
1 ACGCCTTCTCAAGGTCAATGA
116026 ACGCCTTCTCAAGGTCAATGA
1 ACGCCTTCTCAAGGTCAATGA
116047 ACGCC
1 ACGCC
116052 ATGTGAAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (21 bp):
ACGCCTTCTCAAGGTCAATGA
Found at i:116719 original size:20 final size:20
Alignment explanation
Indices: 116671--116712 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
116661 CTCCAATTTT
* *
116671 GCAACGCGAATTTGTAAATC
1 GCAATGCGAATCTGTAAATC
116691 GCAATGCGAATCTGTAAATC
1 GCAATGCGAATCTGTAAATC
116711 GC
1 GC
116713 GTTGCGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.24
Consensus pattern (20 bp):
GCAATGCGAATCTGTAAATC
Found at i:116772 original size:20 final size:20
Alignment explanation
Indices: 116747--116796 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
116737 CTGAATTTCA
116747 AATTCGCAACTCGATTTCTG
1 AATTCGCAACTCGATTTCTG
*
116767 AATTCGCAACTTGATTTCTG
1 AATTCGCAACTCGATTTCTG
116787 AATTCGCAAC
1 AATTCGCAAC
116797 GCGAATTTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (20 bp):
AATTCGCAACTCGATTTCTG
Found at i:117653 original size:12 final size:12
Alignment explanation
Indices: 117632--117665 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
117622 ACCACATTTC
*
117632 CAATACCAAACA
1 CAATATCAAACA
117644 CAATATCAAACA
1 CAATATCAAACA
*
117656 CAATCTCAAA
1 CAATATCAAA
117666 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:117844 original size:24 final size:24
Alignment explanation
Indices: 117786--117832 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
117776 ATTCAGTATT
*
117786 CGAAATTTGATCTTGGTCAATACC
1 CGAACTTTGATCTTGGTCAATACC
117810 CGAACTTTGATCTTGGTCAATAC
1 CGAACTTTGATCTTGGTCAATAC
117833 TCGGATTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (24 bp):
CGAACTTTGATCTTGGTCAATACC
Found at i:120126 original size:18 final size:18
Alignment explanation
Indices: 120103--120143 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
120093 AAGAAAAATG
120103 AAATCAAAATCGCAATCA
1 AAATCAAAATCGCAATCA
120121 AAATCAAAATCGCAATCA
1 AAATCAAAATCGCAATCA
*
120139 CAATC
1 AAATC
120144 GGCTTCACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.54, C:0.24, G:0.05, T:0.17
Consensus pattern (18 bp):
AAATCAAAATCGCAATCA
Found at i:120364 original size:20 final size:20
Alignment explanation
Indices: 120319--120364 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
120309 GTTGCGATTG
120319 TTGCGAAAGTCAAATTCGCA
1 TTGCGAAAGTCAAATTCGCA
** * *
120339 ACGCGAAAGTTAAATTCGCC
1 TTGCGAAAGTCAAATTCGCA
120359 TTGCGA
1 TTGCGA
120365 TTGTTGCGAA
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (20 bp):
TTGCGAAAGTCAAATTCGCA
Found at i:120498 original size:20 final size:20
Alignment explanation
Indices: 120403--120499 Score: 124
Period size: 20 Copynumber: 4.8 Consensus size: 20
120393 AAATCGCAAC
* **
120403 GCGAAGTTGACTTTTACGTT
1 GCGAATTTGACTTTCGCGTT
*
120423 GCGAATTTGGA-TTTCACGTT
1 GCGAATTT-GACTTTCGCGTT
120443 GCGAATTTGACTTTCGCGTT
1 GCGAATTTGACTTTCGCGTT
*
120463 GAGAATTTGACTTTCGCGTT
1 GCGAATTTGACTTTCGCGTT
*
120483 GCGAATTTGATTTTCGC
1 GCGAATTTGACTTTCGC
120500 AACCATCACA
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
19 2 0.03
20 65 0.94
21 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.25, T:0.40
Consensus pattern (20 bp):
GCGAATTTGACTTTCGCGTT
Found at i:120554 original size:20 final size:20
Alignment explanation
Indices: 120513--120556 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
120503 CATCACAACT
*
120513 CGAATTTGACTTTCGCGTTG
1 CGAATTTGACTTTCGCGCTG
* *
120533 CGAATTTGATTTTCGTGCTG
1 CGAATTTGACTTTCGCGCTG
120553 CGAA
1 CGAA
120557 AGTGTACCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.39
Consensus pattern (20 bp):
CGAATTTGACTTTCGCGCTG
Found at i:120701 original size:14 final size:14
Alignment explanation
Indices: 120682--120716 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
120672 TCAATTAAAA
120682 AAATCAACTTTTAC
1 AAATCAACTTTTAC
120696 AAATCAACTTTTAC
1 AAATCAACTTTTAC
120710 AAATCAA
1 AAATCAA
120717 TTGAACAAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.49, C:0.20, G:0.00, T:0.31
Consensus pattern (14 bp):
AAATCAACTTTTAC
Found at i:120752 original size:78 final size:77
Alignment explanation
Indices: 120616--120790 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 77
120606 ATTTAAAACA
120616 ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTAAA
1 ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTAAA
120681 AAAATCAACTTTT
66 AAAATCAAC-TTT
* *** * *
120694 ACAAATCAACTTTTACAAATCAATTGAACAAGCAAAAAATAATTCTTATTTCCTCATCAATTAAA
1 ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTAAA
*
120759 CAAATCAACTTT
66 AAAATCAACTTT
*
120771 ATAAATCAACTTTTACAAAT
1 ACAAATCAACTTTTACAAAT
120791 ACATCAATTT
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
77 22 0.25
78 67 0.75
ACGTcount: A:0.50, C:0.17, G:0.02, T:0.30
Consensus pattern (77 bp):
ACAAATCAACTTTTACAAATCAATTAAACAAGCAAAAAATAAGAATTATTTACACATCAATTAAA
AAAATCAACTTT
Found at i:122184 original size:21 final size:21
Alignment explanation
Indices: 122155--122262 Score: 94
Period size: 21 Copynumber: 5.1 Consensus size: 21
122145 GAATGGTGGG
122155 AGGGACCTCTTGAACGATGACA
1 AGGG-CCTCTTGAACGATGACA
* *
122177 AGGGCCTCTTGAACGGT-AGGA
1 AGGGCCTCTTGAACGATGA-CA
* * *
122198 TGGGCCTCTTGAAGGATGATA
1 AGGGCCTCTTGAACGATGACA
* **
122219 GGGGCCTCTTGAACGAT-AGG
1 AGGGCCTCTTGAACGATGACA
*
122239 AGAGGCCTCTTGAATGATGACA
1 AG-GGCCTCTTGAACGATGACA
122261 AG
1 AG
122263 TGCTTCGGGC
Statistics
Matches: 68, Mismatches: 14, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
20 3 0.04
21 57 0.84
22 8 0.12
ACGTcount: A:0.27, C:0.19, G:0.33, T:0.21
Consensus pattern (21 bp):
AGGGCCTCTTGAACGATGACA
Found at i:122224 original size:42 final size:42
Alignment explanation
Indices: 122160--122262 Score: 145
Period size: 42 Copynumber: 2.5 Consensus size: 42
122150 GTGGGAGGGA
*
122160 CCTCTTGAACGATGACAAGGGCCTCTTGAACGGTAGGATG-GG
1 CCTCTTGAACGATGACAAGGGCCTCTTGAACGATAGGA-GAGG
* * *
122202 CCTCTTGAAGGATGATAGGGGCCTCTTGAACGATAGGAGAGG
1 CCTCTTGAACGATGACAAGGGCCTCTTGAACGATAGGAGAGG
*
122244 CCTCTTGAATGATGACAAG
1 CCTCTTGAACGATGACAAG
122263 TGCTTCGGGC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
41 1 0.02
42 52 0.98
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.22
Consensus pattern (42 bp):
CCTCTTGAACGATGACAAGGGCCTCTTGAACGATAGGAGAGG
Found at i:122628 original size:21 final size:21
Alignment explanation
Indices: 122575--122649 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
122565 GTAAAGTAGA
*
122575 TACCTCACCACGTAAAGCACCA
1 TACCTCACCACGTAAAG-ACCC
** *
122597 T-TGTCATCACGTAAA-ACCTC
1 TACCTCACCACGTAAAGACC-C
*
122617 TACCTCACCACGTAAAGACCG
1 TACCTCACCACGTAAAGACCC
*
122638 TACCTCATCACG
1 TACCTCACCACG
122650 CCATGCACTA
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
19 3 0.07
20 1 0.02
21 33 0.80
22 4 0.10
ACGTcount: A:0.32, C:0.37, G:0.11, T:0.20
Consensus pattern (21 bp):
TACCTCACCACGTAAAGACCC
Found at i:124403 original size:24 final size:22
Alignment explanation
Indices: 124357--124404 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
124347 GATGGAGATA
* *
124357 GACGGATTTCGCCGGAGATTGG
1 GACGGATGTCGCCGGAGAGTGG
124379 GACGGATGTCGCCGTAGAGAGTGG
1 GACGGATGTCGCCG--GAGAGTGG
124403 GA
1 GA
124405 GATAGAGATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 13 0.59
24 9 0.41
ACGTcount: A:0.21, C:0.17, G:0.44, T:0.19
Consensus pattern (22 bp):
GACGGATGTCGCCGGAGAGTGG
Found at i:124518 original size:19 final size:20
Alignment explanation
Indices: 124496--124533 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
124486 AATATTGTGT
124496 TTCGAATT-CGAAAATAAAA
1 TTCGAATTGCGAAAATAAAA
**
124515 TTCGCGTTGCGAAAATAAA
1 TTCGAATTGCGAAAATAAA
124534 CACGCTTTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (20 bp):
TTCGAATTGCGAAAATAAAA
Found at i:126520 original size:4 final size:4
Alignment explanation
Indices: 126513--126562 Score: 100
Period size: 4 Copynumber: 12.5 Consensus size: 4
126503 ATAGACAAAC
126513 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
126561 AA
1 AA
126563 GATCCATTAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 46 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:127361 original size:51 final size:49
Alignment explanation
Indices: 127295--127492 Score: 201
Period size: 51 Copynumber: 4.1 Consensus size: 49
127285 AGATATGCAT
* *
127295 ACTTAAACCGGTGTAAATATGTGTTAAATGCTACATTTTTTTATTTTATTC
1 ACTTACACCGATGTAAATATGTGTTAAATGCTACA--TTTTTATTTTATTC
* *
127346 ACTTACACCGATGTAAGTATGTGTTAAGTGCTACATTTTTTTTATTTTATTC
1 ACTTACACCGATGTAAATATGTGTTAAATGCTACA---TTTTTATTTTATTC
* * * * *
127398 TCTTACATCGATG----TGTGTATTAAATGTTACA-TTTT-TTTTATTC
1 ACTTACACCGATGTAAATATGTGTTAAATGCTACATTTTTATTTTATTC
* * *
127441 ACTTACACTGGTGTAAATATATGTTAAATGCTACATTTTTATTTTATTC
1 ACTTACACCGATGTAAATATGTGTTAAATGCTACATTTTTATTTTATTC
127490 ACT
1 ACT
127493 CACATTGTTA
Statistics
Matches: 122, Mismatches: 18, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
43 17 0.14
44 4 0.03
47 14 0.11
48 18 0.15
49 11 0.09
51 31 0.25
52 27 0.22
ACGTcount: A:0.27, C:0.13, G:0.12, T:0.48
Consensus pattern (49 bp):
ACTTACACCGATGTAAATATGTGTTAAATGCTACATTTTTATTTTATTC
Found at i:135731 original size:11 final size:12
Alignment explanation
Indices: 135715--135747 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
135705 TAAAGGGGAG
135715 TAATTTCAAAC-
1 TAATTTCAAACT
135726 TAATTTCAAACT
1 TAATTTCAAACT
*
135738 TGATTTCAAA
1 TAATTTCAAA
135748 ATCTTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.39
Consensus pattern (12 bp):
TAATTTCAAACT
Found at i:146631 original size:12 final size:13
Alignment explanation
Indices: 146603--146633 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
146593 AGTCAGCCTG
146603 AAAACACTAAGTA
1 AAAACACTAAGTA
*
146616 AAAACACTTAGTA
1 AAAACACTAAGTA
146629 AAAAC
1 AAAAC
146634 GCAGAAACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.61, C:0.16, G:0.06, T:0.16
Consensus pattern (13 bp):
AAAACACTAAGTA
Found at i:147518 original size:20 final size:20
Alignment explanation
Indices: 147488--147542 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
147478 CGCCACCATC
147488 TGGTT-GGCTCGGTTTTGCT
1 TGGTTCGGCTCGGTTTTGCT
147507 TGGTTCGGCTCGGTTTTGCT
1 TGGTTCGGCTCGGTTTTGCT
147527 TGGTTCGGCTCGGTTT
1 TGGTTCGGCTCGGTTT
147543 GTAGTGGTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 5 0.14
20 30 0.86
ACGTcount: A:0.00, C:0.18, G:0.36, T:0.45
Consensus pattern (20 bp):
TGGTTCGGCTCGGTTTTGCT
Found at i:163026 original size:230 final size:224
Alignment explanation
Indices: 162720--163160 Score: 661
Period size: 230 Copynumber: 1.9 Consensus size: 224
162710 GTGACATTCG
* * * *
162720 GGTCGGGTCGAGTTCGAGTTTAGGGTGAAAAATACTCGACCGACCCGAAAATATATATAATTTTA
1 GGTCAGGTCGAGTTCGAGTTTAGGGCGAAAAATACCCGACCGACCCGAAAAAATATATAATTTTA
*
162785 CCTTATATATTTAGGAATAATTACAATAATACCCCTCTATAGATAATTTTTTTTCAATTAAGTCA
66 CCTTATATATTTAGGAATAATTAAAATAATACCCCTCTATAGATAA-TTTTTTTCAATTAAGTCA
* * *
162850 CTGTTTTTATTGAATAAAAATAATATTTTATTATTTCGGGTTAGGTTGGGTTGGGTTTCTAATTC
130 CTATTTTTATTGAATAAAAATAATATTTTATTATTTC----T-GGTCGGGTCGGGTTTCTAATTC
*
162915 ATATATT-TGAGTCAGGTCGGGTGAAACTTTATTTT
190 ATATATTCAG-GTCAGGTCGGGTGAAACTTTATTTT
* *
162950 GGTCAGGTCGGGTTCGAGTTTAGGGCGAAAAATACCCGACCCGA-CCTAAAAAATATATAATTTT
1 GGTCAGGTCGAGTTCGAGTTTAGGGCGAAAAATACCCGA-CCGACCCGAAAAAATATATAATTTT
*
163014 ACCTTATATATTTAGGAATAATTAAAATAATACCCCTCTATATATAATTTTTTTCAATTAAGTCA
65 ACCTTATATATTTAGGAATAATTAAAATAATACCCCTCTATAGATAATTTTTTTCAATTAAGTCA
* * *
163079 CTATTTTTATTGAATAAAAATATTTTTTTATTATTTCTGGTCGGGTCGGGTTTTTAATTCATATA
130 CTATTTTTATTGAATAAAAATAATATTTTATTATTTCTGGTCGGGTCGGGTTTCTAATTCATATA
163144 TTCAGGTCAGGTCGGGT
195 TTCAGGTCAGGTCGGGT
163161 CTCGGATGGA
Statistics
Matches: 194, Mismatches: 15, Indels: 10
0.89 0.07 0.05
Matches are distributed among these distances:
224 38 0.20
225 2 0.01
229 52 0.27
230 98 0.51
231 4 0.02
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (224 bp):
GGTCAGGTCGAGTTCGAGTTTAGGGCGAAAAATACCCGACCGACCCGAAAAAATATATAATTTTA
CCTTATATATTTAGGAATAATTAAAATAATACCCCTCTATAGATAATTTTTTTCAATTAAGTCAC
TATTTTTATTGAATAAAAATAATATTTTATTATTTCTGGTCGGGTCGGGTTTCTAATTCATATAT
TCAGGTCAGGTCGGGTGAAACTTTATTTT
Found at i:163549 original size:17 final size:18
Alignment explanation
Indices: 163523--163568 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
163513 TATGGAATTG
* *
163523 GATTCTAATTCC-TGACA
1 GATTCCAATTCCTTCACA
163540 GATTCCAATTCCTTCACA
1 GATTCCAATTCCTTCACA
163558 GATTCCAATTC
1 GATTCCAATTC
163569 TCTCAGAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (18 bp):
GATTCCAATTCCTTCACA
Done.