genome.fa.s3054.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003054.1 Hibiscus syriacus cultivar Beakdansim tig00006366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58722

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1663--1731	31	2.2	32	84	7	88	30	5	4	59	1.40
4939--4987	22	2.1	22	85	7	62	55	16	0	28	1.42
4952--4998	22	2.1	22	96	0	85	48	12	2	36	1.53
5244--5288	22	2.1	22	83	4	56	28	0	48	22	1.50
6050--6110	28	2.1	29	93	3	106	42	3	3	50	1.34
6046--6114	29	2.4	30	90	7	115	42	4	2	50	1.37
17351--17386	19	1.9	19	94	5	65	63	0	0	36	0.94
17808--17844	13	2.8	13	91	0	65	45	0	0	54	1.00
17926--18006	15	5.3	15	77	15	78	33	0	3	62	1.12
17950--18013	15	4.1	15	79	15	67	32	0	4	62	1.16
21005--21036	15	2.1	15	94	0	55	18	25	3	53	1.59
24740--24832	13	7.2	13	77	2	98	4	16	8	70	1.28
24740--24831	38	2.4	39	98	1	177	4	16	8	70	1.28
24745--24834	25	3.5	25	75	4	72	4	17	7	70	1.29
30491--30576	45	1.9	45	95	0	154	27	27	17	26	1.98
36400--36452	21	2.5	22	78	3	54	28	24	22	24	2.00
36400--36480	23	3.7	23	72	8	78	27	25	22	24	2.00
39167--39232	26	2.5	26	100	0	132	24	24	22	28	1.99
42556--42685	29	4.2	30	72	18	124	47	0	2	50	1.13
42556--42639	43	2.0	43	92	0	141	52	0	0	47	1.00
42630--42730	22	4.5	22	69	7	76	37	0	8	53	1.32
42556--42685	14	8.5	15	78	16	124	47	0	2	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42665--43289	54	11.4	54	72	16	353	34	0	12	53	1.41
42710--42816	32	3.7	32	76	23	144	34	0	13	52	1.40
42742--42784	22	2.0	22	100	0	86	34	0	13	51	1.42
42710--43084	134	2.8	137	88	6	520	33	0	13	52	1.45
42665--43289	188	3.4	186	85	7	838	34	0	12	53	1.41
42764--42913	80	1.9	80	97	0	282	32	0	14	52	1.46
42843--43004	32	5.7	31	71	26	153	35	0	12	51	1.44
42930--42972	22	2.0	22	90	0	68	34	2	11	51	1.51
42975--43022	22	2.4	18	73	23	51	33	0	14	52	1.42
43041--43093	14	3.5	14	72	18	52	37	0	5	56	1.23
43031--43257	32	6.7	32	79	14	240	33	0	11	54	1.37
43055--43111	18	3.4	18	69	18	59	33	0	12	54	1.38
43164--43220	18	3.4	18	69	18	59	33	0	8	57	1.29
42843--43225	112	3.5	111	89	6	534	34	0	12	53	1.41
43237--43279	22	2.0	22	100	0	86	34	0	13	51	1.42
43304--43362	31	1.9	31	89	6	93	42	8	6	42	1.61
43857--43889	14	2.4	14	90	5	50	54	9	0	36	1.32
44972--45002	15	2.1	15	93	0	53	22	6	58	12	1.58
45078--45120	21	2.0	21	82	8	52	44	11	32	11	1.77
45087--45129	21	2.0	21	95	0	77	39	11	34	13	1.82
45166--45263	33	3.0	33	93	0	169	27	0	45	26	1.54
45444--45482	18	2.2	18	100	0	78	56	0	38	5	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48022--48545	200	2.6	198	84	4	691	39	14	14	31	1.86
48546--48593	23	2.1	23	88	0	69	35	14	10	39	1.80
48558--48684	64	2.0	64	92	0	209	32	10	11	46	1.73
48858--48912	21	2.4	23	82	11	69	58	0	0	41	0.98
53579--53632	28	1.9	28	88	7	83	29	9	5	55	1.54
57180--57234	24	2.3	24	96	0	101	16	21	27	34	1.95

Tables:   1

The End!