Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003057.1 Hibiscus syriacus cultivar Beakdansim tig00006374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119982

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11672--11710
16
2.3
16
86
8
51
10
5
33
51
1.58
12491--12520
2
15.0
2
100
0
60
50
0
0
50
1.00
13285--13322
18
2.1
18
100
0
76
42
10
21
26
1.85
16904--16938
18
2.0
18
94
5
63
60
5
5
28
1.43
19228--19288
29
2.1
29
100
0
122
42
19
9
27
1.83
32159--32235
23
3.4
22
81
3
91
18
22
23
36
1.95
32873--32902
14
2.1
14
93
0
51
40
6
6
46
1.56
50778--50802
2
12.5
2
100
0
50
48
0
0
52
1.00
52624--52648
3
8.3
3
100
0
50
68
32
0
0
0.90
53193--53255
31
2.0
31
84
6
83
38
14
4
42
1.66
53604--53686
41
2.0
41
85
0
112
34
20
19
25
1.96
53613--53686
20
3.7
20
78
3
94
36
20
21
21
1.95
54298--54370
20
3.7
20
92
0
110
20
19
24
35
1.95
54338--54392
20
2.8
20
88
0
74
10
14
23
50
1.74
56528--56554
6
4.5
6
100
0
54
14
0
55
29
1.40
57353--57386
16
2.1
16
100
0
68
23
0
35
41
1.55
60492--60516
12
2.1
12
100
0
50
60
24
8
8
1.52
60521--60574
19
2.8
19
83
11
65
12
20
18
48
1.81
60541--60651
20
5.4
20
80
4
132
14
22
23
39
1.91
60541--60672
61
2.1
62
97
1
248
16
21
24
37
1.93
60579--60675
20
4.7
21
80
2
81
19
19
25
35
1.96
60664--60735
22
3.4
21
73
11
76
19
18
25
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60514--60713
82
2.4
81
76
8
224
18
19
23
39
1.93
60842--60885
6
7.5
6
97
2
81
31
52
15
0
1.44
61377--61431
6
9.5
6
98
2
96
0
16
52
30
1.44
61502--61544
22
2.0
22
95
0
77
37
27
13
20
1.91
75264--75342
36
2.2
36
97
0
149
50
15
10
24
1.74
86952--87040
34
2.7
31
79
6
88
39
0
2
58
1.11
86982--87049
17
4.1
17
67
19
54
41
0
1
57
1.08
89504--89548
15
3.1
15
78
15
58
4
4
11
80
1.01
99283--99335
26
2.1
26
89
3
81
41
9
0
49
1.35
100409--100442
2
17.0
2
100
0
68
50
0
0
50
1.00
101189--101245
18
3.3
18
66
14
57
19
47
14
19
1.82
101180--101251
33
2.2
33
100
0
144
18
50
15
16
1.79
108208--108605
209
1.9
212
83
4
518
33
17
14
33
1.91
112163--112492
183
1.8
183
91
1
545
30
20
23
26
1.99
115379--115440
29
2.1
29
85
5
81
40
0
0
59
0.97
115413--115484
37
1.9
38
83
8
94
38
0
1
59
1.06
115427--115470
22
2.0
23
82
13
56
38
0
0
61
0.96
115568--115627
29
2.1
29
85
14
81
35
0
1
63
1.05
115604--115650
17
2.8
17
80
3
60
42
0
2
55
1.12
117255--117315
21
2.9
21
90
4
88
18
36
19
26
1.94
117728--117866
56
2.5
58
78
14
157
32
20
10
36
1.86
117765--117852
28
3.1
28
62
6
70
31
20
9
38
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
118134--118719
125
4.8
125
85
7
724
34
22
22
21
1.97
119449--119496
23
2.1
23
96
0
87
27
25
25
22
2.00

Tables:   1

The End!