Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003058.1 Hibiscus syriacus cultivar Beakdansim tig00006375_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75347

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18354--18462
29
3.7
29
86
7
155
27
22
7
43
1.79
18441--18597
81
1.9
81
85
2
217
26
24
12
36
1.91
18547--19617
68
15.8
68
88
0
1527
31
23
14
30
1.94
20258--20311
20
2.7
20
83
11
74
24
25
16
33
1.96
20299--20351
21
2.5
21
100
0
106
28
22
20
28
1.99
22065--22099
18
1.9
18
94
0
61
25
22
17
34
1.96
22897--23008
29
3.9
29
91
2
163
26
20
7
45
1.77
22985--23221
81
2.9
81
84
3
300
28
22
9
39
1.85
23171--23697
68
7.8
68
85
1
671
31
22
14
30
1.94
24359--24414
20
2.8
20
84
10
78
23
30
16
30
1.96
24615--24981
40
9.3
40
69
7
203
34
14
24
27
1.94
24580--24982
80
5.1
80
82
3
483
33
14
24
27
1.94
25099--25135
6
6.2
6
87
12
58
16
0
2
81
0.81
25099--25134
18
1.9
19
94
5
65
16
0
2
80
0.83
25098--25140
18
2.3
19
84
8
61
20
0
2
76
0.89
39377--39443
30
2.2
30
84
5
82
47
8
11
31
1.71
41944--41986
2
21.5
2
90
0
68
4
0
44
51
1.22
42601--42682
15
5.9
13
68
20
51
79
1
2
17
0.91
42609--42713
17
6.4
16
69
11
70
75
0
1
21
0.96
42590--42726
56
2.4
56
77
13
145
75
0
2
21
0.96
42602--42713
8
13.6
8
70
13
68
75
0
1
21
0.94
42590--42721
6
22.0
6
71
18
62
75
0
1
21
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42795--42855
24
2.6
22
75
14
61
70
3
6
19
1.24
43948--44037
39
2.4
39
87
7
125
27
7
23
41
1.82
44023--44239
36
6.2
36
73
16
168
39
12
19
28
1.88
44154--44256
36
2.8
37
86
2
154
35
12
20
31
1.90
44325--44509
37
5.3
37
69
17
126
40
12
18
27
1.88
44294--44533
102
2.4
102
90
0
372
37
12
18
31
1.88
44442--44620
87
2.1
87
91
0
286
36
11
18
33
1.87
44340--44725
189
2.0
189
84
3
490
38
11
18
31
1.87
45673--45784
32
3.5
32
84
6
138
36
20
12
30
1.90
46712--46848
69
2.0
68
88
1
202
27
15
21
36
1.93
46906--46972
27
2.4
27
76
16
66
4
17
0
77
0.93
46930--46975
8
5.6
8
84
10
58
2
17
0
80
0.81
46939--46967
15
1.9
15
100
0
58
3
13
0
82
0.79
46924--46975
23
2.3
23
90
3
79
1
17
0
80
0.80
46941--46974
15
2.3
15
89
0
50
2
17
0
79
0.86
50126--50280
4
37.8
4
69
19
52
71
1
3
23
1.08
50149--50225
25
3.1
23
74
18
59
74
1
5
19
1.08
50156--50225
23
2.9
23
72
23
63
74
1
4
20
1.07
50126--50255
38
3.5
37
74
17
99
73
1
3
21
1.05
50196--50331
37
3.8
36
75
16
138
66
1
2
30
1.13
50289--50350
24
2.6
23
80
10
61
67
3
3
25
1.20
50970--51058
19
4.8
18
79
6
70
42
7
17
31
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51076--51123
6
7.7
6
77
9
51
56
2
20
20
1.53
51075--51132
13
4.5
13
80
4
73
55
1
20
22
1.53
51162--51226
18
3.4
18
66
25
53
30
4
13
50
1.62
51159--51246
39
2.3
39
87
0
131
29
4
15
50
1.64
52636--52845
65
3.3
63
80
8
217
27
18
23
30
1.97
55077--55156
23
3.6
22
74
5
81
23
22
26
27
2.00
55055--55175
43
2.8
42
75
11
111
22
20
28
28
1.99
55120--55176
22
2.7
21
77
15
64
24
14
28
33
1.94
59813--59841
14
2.1
14
100
0
58
41
0
6
51
1.28
64920--65129
65
3.2
64
78
11
205
29
24
19
26
1.98
65101--65149
19
2.6
19
84
9
57
24
28
20
26
1.99
75157--75228
35
2.1
35
100
0
144
34
9
11
44
1.73

Tables:   1

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