genome.fa.s3059.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003059.1 Hibiscus syriacus cultivar Beakdansim tig00006376_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59659

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4491--4553	13	5.5	12	78	17	55	4	12	3	79	1.01
4501--4558	5	10.8	5	83	12	62	1	13	1	82	0.82
4491--4558	24	3.0	23	82	16	81	4	13	2	79	1.00
10225--10283	30	2.0	30	89	0	91	49	5	10	35	1.59
18225--18265	21	2.0	20	90	4	64	17	17	12	53	1.72
21612--21699	24	3.7	24	84	6	115	38	20	18	22	1.93
24166--24194	13	2.2	13	100	0	58	13	20	48	17	1.81
26327--26413	24	3.7	23	86	10	122	36	21	18	22	1.95
26327--26408	12	6.8	13	64	17	52	37	23	17	21	1.93
41392--41460	23	2.9	24	76	6	70	40	15	14	28	1.87
41537--41618	35	2.3	35	87	6	121	62	8	4	24	1.44
45690--45770	15	5.5	15	88	5	121	37	7	19	35	1.80
45690--45770	29	2.8	29	92	5	128	37	7	19	35	1.80
45687--45770	44	1.9	43	92	2	141	39	7	19	34	1.79
45753--45822	20	3.5	20	96	0	131	40	10	14	35	1.79
45989--46128	25	5.3	25	70	23	85	50	1	1	46	1.19
46033--46173	26	5.8	25	69	18	68	50	0	0	48	1.11
46069--46140	23	3.1	22	76	7	54	45	0	1	52	1.09
46072--46140	18	3.9	18	69	12	54	46	0	1	52	1.09
46127--46175	22	2.3	22	89	3	73	46	0	0	53	1.00
46347--46466	42	2.9	42	92	0	195	45	17	19	17	1.85
46518--46854	157	2.2	154	86	7	466	27	19	6	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52173--52215	20	2.2	20	83	4	52	41	2	2	53	1.26

Tables:   1

The End!