Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000306.1 Hibiscus syriacus cultivar Beakdansim tig00000575_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74953

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3745--3816
31
2.3
32
90
2
110
45
6
1
45
1.38
10041--10109
2
34.5
2
100
0
138
50
0
0
49
1.00
11415--11501
11
7.8
11
73
14
63
63
1
4
31
1.22
11424--11490
4
16.8
4
73
11
57
64
0
2
32
1.09
11424--11482
23
2.5
24
91
5
93
62
0
3
33
1.12
15525--15551
3
9.0
3
100
0
54
0
33
0
66
0.92
20048--20084
17
2.1
18
90
5
58
29
32
10
27
1.90
28167--28240
31
2.6
27
74
19
69
44
2
1
51
1.24
29733--29778
3
15.0
3
90
4
65
65
4
0
30
1.12
30562--30587
11
2.4
11
100
0
52
84
0
0
15
0.62
30921--31047
46
2.8
46
80
11
147
39
14
18
28
1.89
32774--32848
29
2.6
29
97
0
141
20
42
28
9
1.82
32858--32893
19
2.0
18
89
10
56
30
38
19
11
1.86
32907--32962
28
2.0
28
100
0
112
35
32
28
3
1.74
32945--33001
28
2.0
28
93
0
96
26
31
33
8
1.87
32990--33084
29
3.3
29
95
0
163
13
30
32
23
1.93
33093--33129
19
1.9
19
100
0
74
27
43
18
10
1.83
33127--33227
49
2.1
48
92
5
168
19
38
18
22
1.93
33439--33477
16
2.3
18
86
8
55
38
0
5
56
1.22
33582--33672
45
2.0
47
85
12
127
40
0
10
48
1.38
33702--33754
12
4.3
12
81
11
63
30
0
16
52
1.44
33735--33811
34
2.3
33
82
10
95
41
0
11
46
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34044--34099
28
2.0
28
100
0
112
3
28
32
35
1.74
34113--34148
19
2.0
18
89
10
56
11
19
38
30
1.86
34158--34232
29
2.6
29
97
0
141
9
28
42
20
1.82
45656--45722
25
2.6
25
80
4
71
44
8
10
35
1.70
46053--46092
10
4.1
10
83
3
55
32
0
0
67
0.91
48922--48958
14
2.4
16
86
8
51
32
13
0
54
1.40
49283--49339
23
2.5
23
82
0
69
26
26
24
22
2.00
54721--54776
23
2.4
24
88
5
80
30
21
25
23
1.99
65738--65773
16
2.1
18
90
10
58
66
11
5
16
1.40

Tables:   1

The End!