Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003060.1 Hibiscus syriacus cultivar Beakdansim tig00006377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59567

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17435--17480
19
2.3
20
85
3
58
52
4
4
39
1.41
18322--18359
16
2.5
15
84
16
51
52
0
0
47
1.00
19120--19162
21
2.0
21
90
0
68
58
0
2
39
1.11
25553--25617
27
2.4
27
92
0
103
30
12
23
33
1.91
27433--27491
26
2.2
27
87
3
84
38
11
8
40
1.72
32559--32590
10
3.4
10
83
16
50
50
0
0
50
1.00
34324--34368
13
3.2
13
84
12
54
35
0
26
37
1.57
36515--36670
64
2.4
64
79
10
176
35
19
19
25
1.95
37035--37165
29
4.6
29
95
0
237
45
16
20
16
1.85
37250--37283
15
2.3
15
94
0
59
14
20
32
32
1.93
42777--42807
14
2.2
14
100
0
62
67
0
0
32
0.91
43163--43234
20
3.6
20
92
0
117
22
22
12
43
1.86
54251--54403
20
7.6
20
78
13
95
41
23
14
20
1.89
54251--54403
40
3.8
40
75
17
136
41
23
14
20
1.89
54336--54403
21
3.3
21
83
6
86
45
26
10
17
1.80
54554--54608
22
2.5
22
87
0
74
21
36
18
23
1.95
54953--55002
20
2.5
20
96
0
91
46
24
20
10
1.81
57168--57221
21
2.8
19
82
15
67
20
24
24
31
1.98
57211--57281
21
3.5
21
74
11
67
18
36
22
22
1.95
58579--58738
65
2.4
64
85
9
207
30
3
16
50
1.60
58810--58873
20
3.2
20
68
4
67
34
21
21
21
1.97

Tables:   1

The End!