genome.fa.s3061.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003061.1 Hibiscus syriacus cultivar Beakdansim tig00006379_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150185

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8067--8099	15	2.3	15	89	5	50	48	3	0	48	1.17
11352--11381	2	15.0	2	100	0	60	50	0	0	50	1.00
12625--12663	19	2.1	19	85	0	51	64	12	2	20	1.40
14303--14349	3	16.3	3	86	8	71	63	2	0	34	1.06
14304--14359	26	2.2	26	83	6	69	67	1	0	30	1.01
14507--14956	134	3.4	132	81	5	487	24	17	30	27	1.97
14709--14804	40	2.3	40	84	8	113	22	17	36	22	1.95
14964--15051	29	3.1	29	79	9	90	45	14	13	26	1.82
15058--15243	67	2.9	64	79	11	200	41	16	17	23	1.89
15698--15838	65	2.1	67	80	7	155	41	13	12	31	1.82
15610--15845	67	3.6	65	74	10	212	39	12	12	35	1.82
15809--15870	33	1.9	33	93	3	108	41	14	9	33	1.79
16372--16441	4	18.0	4	85	5	99	27	1	22	48	1.59
17482--18003	4	131.0	4	98	0	1012	24	0	25	49	1.53
24004--24047	22	2.0	22	82	8	54	18	15	40	25	1.90
24273--24349	3	26.3	3	90	5	122	62	0	0	37	0.96
28848--29051	110	1.9	110	92	0	345	23	18	23	35	1.96
33033--33110	27	2.8	27	75	14	70	65	1	2	30	1.14
33469--33552	31	2.6	32	83	9	100	28	13	19	39	1.89
33596--33649	23	2.5	22	84	6	65	68	1	0	29	1.00
38036--38069	17	1.9	18	88	5	52	55	11	0	32	1.36
41333--41358	11	2.4	11	100	0	52	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42542--42604	23	2.6	24	80	17	76	49	3	3	44	1.34
42566--42634	25	2.6	27	77	8	72	53	7	1	37	1.38
49732--49772	21	2.0	21	85	0	55	4	29	12	53	1.58
51985--52140	43	3.7	43	79	6	131	35	17	18	27	1.94
51962--52239	41	6.7	41	80	4	245	36	17	18	26	1.93
54064--54093	13	2.4	13	94	5	53	16	0	20	63	1.31
62311--62433	8	14.6	8	77	14	106	73	0	15	9	1.12
62326--62446	17	7.0	16	72	12	71	75	0	16	7	1.07
63778--64148	55	6.8	56	81	3	353	31	16	22	30	1.95
66902--66933	13	2.6	13	90	9	50	15	0	15	68	1.21
67956--68236	82	3.4	81	80	6	298	32	16	18	32	1.93
67997--68113	42	2.8	42	70	12	107	34	17	17	31	1.93
69023--69139	51	2.3	49	78	11	121	49	3	0	47	1.18
69070--69138	23	2.7	25	80	12	79	49	5	0	44	1.26
69070--69134	28	2.3	28	84	5	78	49	6	0	44	1.27
69160--69231	27	2.7	25	79	16	74	43	1	4	51	1.29
69240--69315	22	3.5	22	69	13	59	51	1	0	47	1.09
69405--69461	17	3.5	17	71	20	50	57	1	1	38	1.19
70296--70326	2	15.5	2	100	0	62	48	0	0	51	1.00
78374--78411	8	4.8	8	90	0	58	13	31	0	55	1.38
80960--80993	12	2.8	12	95	0	59	23	11	50	14	1.76
81467--81571	42	2.5	42	76	11	110	31	20	23	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81610--82440	39	21.3	39	84	2	997	35	16	17	30	1.92
81771--81837	22	3.3	22	60	20	54	31	14	19	34	1.92
81610--82438	116	7.1	116	84	3	980	36	16	17	30	1.92
82464--82571	36	2.8	38	72	14	96	41	13	12	32	1.82
82560--82638	39	2.1	38	83	6	99	40	15	16	27	1.88
82651--82722	37	2.0	36	88	2	108	41	11	18	29	1.84
82824--82917	42	2.3	42	88	5	138	31	21	21	25	1.98
82957--83173	43	5.1	43	89	0	337	28	29	12	29	1.94
83086--83155	21	3.3	21	66	18	63	32	31	10	25	1.89
85204--85266	1	63.0	1	77	0	54	3	7	1	87	0.71
85191--85266	7	10.6	7	75	13	57	2	10	1	85	0.76
85211--85266	27	2.2	27	87	9	82	3	8	0	87	0.65
85191--85285	46	2.0	49	82	15	119	5	11	2	81	0.95
85191--85259	16	4.6	14	78	18	68	2	10	1	85	0.76
85189--85264	23	3.3	23	71	25	61	2	11	1	84	0.79
85238--85280	19	2.3	19	84	4	52	9	9	2	79	1.03
88201--88244	18	2.4	18	85	7	63	38	0	6	54	1.27
100845--100908	33	1.9	33	100	0	128	35	21	12	29	1.91
101653--101700	20	2.4	20	92	0	78	33	6	29	31	1.82
102906--102977	32	2.2	32	82	4	83	37	13	13	34	1.85
114273--114356	42	2.0	42	86	8	120	54	8	4	32	1.51
114791--114833	18	2.5	17	85	7	61	67	2	4	25	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115224--115324	34	2.9	36	86	10	163	27	14	13	43	1.84
115872--116532	105	6.3	105	89	3	872	22	17	26	34	1.96
115872--116532	315	2.1	312	87	4	963	22	17	26	34	1.96
117122--117292	68	2.5	68	82	6	206	36	9	21	32	1.86
117267--117647	36	11.0	36	75	14	338	39	13	19	27	1.89
117279--117365	37	2.4	36	86	1	111	42	16	17	24	1.88
117216--117520	136	2.2	136	84	4	389	40	13	19	27	1.88
117271--117647	172	2.2	173	85	4	485	39	13	19	27	1.89
117584--117640	15	3.5	15	69	17	51	36	15	24	22	1.94
117580--117645	34	1.9	34	93	0	114	36	15	24	24	1.93
117404--117697	36	8.4	35	76	15	143	38	13	20	27	1.91
118128--118163	18	2.0	18	94	0	63	41	33	8	16	1.78
118598--118641	22	2.0	22	91	8	72	27	11	20	40	1.86
119240--119311	16	4.3	16	74	8	63	1	11	5	81	0.90
119229--119277	16	3.0	16	82	5	62	0	16	4	79	0.88
119247--119311	25	2.6	25	82	7	87	1	10	6	81	0.93
119240--119291	17	3.1	15	84	13	50	0	9	5	84	0.77
119263--119304	13	3.4	12	81	12	50	2	9	9	78	1.05
123764--123843	40	2.0	40	86	9	112	55	8	5	31	1.52
124204--124240	2	18.5	2	94	0	65	54	0	0	45	1.00
124206--124292	10	9.0	10	74	18	60	58	1	4	35	1.26
124202--124243	12	3.4	12	90	3	66	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124204--124250	14	3.4	14	88	5	69	57	0	0	42	0.98
124289--124331	18	2.5	17	85	7	61	67	2	4	25	1.22
124719--124822	34	2.9	35	87	11	158	30	15	10	43	1.80
133316--133419	48	2.2	48	92	0	172	24	6	2	66	1.30
133340--133413	4	18.5	4	74	20	66	22	4	2	70	1.17
136172--136291	42	2.8	41	85	6	168	26	4	18	50	1.64
142435--142464	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!