genome.fa.s3062.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003062.1 Hibiscus syriacus cultivar Beakdansim tig00006380_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85789

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1164--1270	37	3.0	36	83	5	137	42	11	19	26	1.84
1231--1397	63	2.6	63	85	2	228	41	9	19	28	1.83
1348--1434	34	2.5	36	79	5	97	43	10	17	28	1.81
1337--1816	102	4.8	99	86	2	419	39	13	18	28	1.88
1645--1816	37	4.9	37	68	16	105	37	14	20	27	1.92
1547--1826	102	2.8	101	91	3	440	37	14	18	28	1.91
1735--1892	86	1.8	86	90	0	253	36	13	16	33	1.88
1833--1904	37	1.9	37	86	5	101	40	12	16	30	1.86
3321--3507	95	2.0	94	89	3	286	29	20	18	31	1.96
4561--4609	16	3.2	16	81	16	59	63	2	0	34	1.06
10032--10077	20	2.3	20	85	3	58	71	0	8	19	1.11
10183--10297	2	60.0	2	81	11	116	53	0	3	42	1.17
10381--10442	27	2.3	27	91	0	97	46	4	11	37	1.61
16427--16451	2	12.5	2	100	0	50	48	0	52	0	1.00
16571--16645	3	25.0	3	100	0	150	66	0	0	33	0.92
22009--22033	6	4.2	6	100	0	50	16	16	52	16	1.76
22996--23024	12	2.3	13	94	5	51	68	0	0	31	0.89
23261--23317	30	1.9	30	88	0	87	61	7	10	21	1.52
24899--24951	3	17.3	3	81	11	63	62	0	3	33	1.13
25332--25712	84	4.5	84	86	3	469	21	18	23	36	1.95
25770--25994	121	1.9	121	88	0	342	25	13	24	35	1.93
26010--26293	156	1.8	156	87	1	426	26	14	21	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26228--26355	64	2.0	64	96	0	238	28	13	22	35	1.92
26967--27017	25	2.0	25	88	0	75	27	27	19	25	1.99
28082--28157	13	5.8	14	73	20	58	1	15	5	77	1.01
28093--28159	13	5.4	12	76	13	64	1	14	4	79	0.97
28125--28158	15	2.3	15	90	10	52	0	14	2	82	0.79
34540--34597	28	2.1	28	90	6	91	39	5	22	32	1.76
35250--35283	14	2.4	14	100	0	68	47	0	32	20	1.51
39330--39371	3	13.7	3	85	14	59	35	0	2	61	1.09
40106--40139	6	5.7	6	85	0	50	47	0	2	50	1.16
40297--40346	23	2.2	23	85	7	66	14	4	6	76	1.13
40665--40714	21	2.4	20	80	9	55	28	6	0	66	1.15
40932--40967	15	2.3	15	95	4	63	27	5	2	63	1.30
43249--43280	13	2.5	13	94	0	55	15	18	15	50	1.79
44405--44764	189	1.9	189	86	0	513	33	16	20	29	1.95
45952--45989	15	2.5	15	91	0	58	21	26	15	36	1.93
45967--46211	73	3.4	71	77	8	228	27	20	12	40	1.88
45967--46211	36	6.8	36	81	8	212	27	20	12	40	1.88
46286--46408	33	3.6	33	74	11	115	34	20	11	33	1.88
47236--47784	201	2.7	199	82	3	661	32	18	21	27	1.97
49571--49611	15	2.6	16	81	11	50	31	4	4	58	1.40
50868--50920	21	2.6	20	80	11	54	33	20	18	26	1.96
54621--54668	19	2.5	19	96	0	87	33	10	20	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54950--55010	31	2.0	31	96	0	113	31	21	13	34	1.91
57181--57223	21	2.0	21	86	4	59	25	30	23	20	1.99
57961--58021	22	2.8	22	92	5	97	24	26	22	26	2.00
60859--60962	21	5.0	21	72	15	90	21	20	23	35	1.96
60865--60962	42	2.3	42	92	0	169	21	19	23	35	1.96
61565--61605	5	7.6	5	91	8	55	0	19	56	24	1.42
61612--61762	21	7.3	21	71	18	102	24	21	22	31	1.99
61612--61762	62	2.4	62	92	2	241	24	21	22	31	1.99
61688--61804	41	2.9	41	88	7	170	23	22	20	34	1.97
63540--63597	27	2.1	27	81	6	64	25	18	0	55	1.43
64322--64509	60	3.2	59	78	6	218	31	24	4	39	1.75
67057--67138	23	3.6	23	72	16	80	52	3	2	41	1.32
68024--68092	33	2.1	33	88	0	102	21	13	8	56	1.63
68583--68610	12	2.3	12	100	0	56	67	0	0	32	0.91
71342--71394	21	2.5	21	87	0	79	20	24	20	33	1.97
71384--71467	20	4.6	20	76	19	92	40	16	19	23	1.91
71406--71432	13	2.1	13	100	0	54	44	14	18	22	1.86
71386--71452	33	2.0	33	91	0	107	41	13	19	25	1.88
71456--71528	20	3.7	20	88	0	110	27	27	21	23	1.99
71614--71648	17	2.1	17	100	0	70	51	31	0	17	1.45
72143--72212	20	3.5	20	86	0	68	17	18	22	41	1.90
72162--72217	20	2.8	20	88	0	76	8	16	25	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72181--72224	20	2.2	20	87	0	61	9	13	22	54	1.67
73160--73209	18	2.8	18	100	0	100	32	20	6	42	1.76
73358--73405	20	2.4	20	92	0	78	33	27	20	18	1.96
73448--73514	20	3.5	19	86	8	91	17	19	26	35	1.94
75509--75570	14	4.3	14	79	6	70	37	0	16	46	1.47
75511--75565	29	1.9	29	85	3	76	34	0	18	47	1.49
75717--75890	20	9.1	20	80	8	182	25	20	22	32	1.98
75984--76018	18	1.9	18	94	0	61	17	2	25	54	1.57
75985--76024	18	2.2	18	86	0	53	20	5	25	50	1.68
75997--76032	12	3.0	12	91	0	63	19	8	22	50	1.74
79163--79236	20	3.7	20	92	0	121	25	21	27	25	2.00
79208--79265	30	1.9	30	89	0	89	29	18	25	25	1.98
79238--79280	20	2.2	20	91	0	68	27	18	25	27	1.98
79264--79339	20	3.8	20	98	0	143	26	21	15	36	1.93
79336--79381	21	2.2	21	92	0	74	36	19	26	17	1.94
79429--79484	19	2.9	19	89	0	85	23	19	21	35	1.96

Tables:   1

The End!