genome.fa.s3064.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003064.1 Hibiscus syriacus cultivar Beakdansim tig00006388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58069

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
919--961	13	3.3	13	80	0	50	55	2	0	41	1.12
907--961	26	2.1	26	83	6	67	56	1	0	41	1.10
1778--1840	27	2.3	27	86	0	81	33	22	19	25	1.97
2209--2252	16	2.8	16	82	0	52	43	15	18	22	1.88
5069--5108	13	3.4	13	74	25	52	70	0	30	0	0.88
5067--5110	22	2.0	22	100	0	88	68	0	31	0	0.90
9903--9972	32	2.2	32	97	0	131	25	17	21	35	1.95
17892--18067	94	1.9	94	87	2	264	31	17	26	25	1.97
18059--18108	27	1.9	25	92	8	82	34	12	24	30	1.91
18527--18867	45	7.6	45	83	5	386	39	9	21	30	1.85
22769--22811	13	3.3	13	83	0	59	30	23	20	25	1.99
22789--23009	85	2.6	85	83	5	272	28	19	17	33	1.95
22789--23037	85	3.0	84	76	8	247	30	19	18	32	1.95
24960--25077	51	2.3	50	85	7	157	0	38	6	53	1.33
28913--28953	15	2.7	15	88	3	55	9	19	12	58	1.61
33304--33356	13	4.1	13	82	0	61	28	22	20	28	1.99
33303--33354	26	2.0	26	84	0	68	26	23	19	30	1.98
34955--35006	20	2.6	20	93	0	86	11	23	21	44	1.84
35037--35090	22	2.5	22	87	0	90	18	16	27	37	1.93
35189--35215	6	4.5	6	100	0	54	33	51	14	0	1.43
35703--35746	6	7.3	6	100	0	88	0	15	50	34	1.45
35841--35909	19	3.5	19	69	11	66	39	20	20	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35859--35930	22	3.4	22	69	11	78	37	23	19	19	1.94
35841--36107	41	6.6	41	78	12	270	37	23	18	20	1.94
35855--35953	22	4.7	22	67	16	68	39	23	21	16	1.92
35894--35953	20	2.9	20	76	13	68	38	25	23	13	1.91
35946--36000	21	2.6	21	97	0	101	29	29	12	29	1.93
35999--36067	19	3.5	19	73	11	75	39	21	20	18	1.93
36017--36088	22	3.4	22	71	11	78	38	25	18	18	1.92
36011--36107	22	4.7	20	72	14	72	41	22	19	16	1.90
35818--36153	158	2.1	158	93	0	575	36	23	17	23	1.95
36100--36153	21	2.6	21	87	0	81	31	25	14	27	1.95
41060--41261	95	2.1	94	82	6	239	33	12	25	28	1.93
41678--41816	45	3.1	45	81	4	145	40	9	20	30	1.84
41651--41855	45	4.6	45	79	4	139	38	8	20	32	1.83
41688--41858	90	1.9	90	80	4	202	40	7	18	33	1.79
47454--47495	22	1.9	22	90	0	66	30	7	30	30	1.84
47292--47505	94	2.3	94	86	2	286	32	13	26	27	1.94
47930--48060	45	2.9	44	84	7	174	41	8	16	32	1.79
47934--48097	45	3.6	45	82	8	138	41	7	16	34	1.77

Tables:   1

The End!