genome.fa.s3065.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003065.1 Hibiscus syriacus cultivar Beakdansim tig00006389_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89459

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11164--11198	14	2.5	14	90	0	52	25	22	2	48	1.64
13536--13574	15	2.5	16	88	12	55	82	2	15	0	0.79
13537--13617	19	4.5	19	72	16	50	76	1	14	7	1.06
16597--16683	42	2.1	41	86	2	120	25	21	20	32	1.98
16603--16695	42	2.2	42	82	3	107	26	21	19	32	1.97
16848--16939	42	2.2	42	82	3	105	20	19	25	34	1.96
16582--17194	266	2.3	260	88	1	920	29	17	20	32	1.96
17122--17221	42	2.4	42	81	6	114	27	23	18	32	1.97
17610--17654	3	16.0	3	86	9	60	33	0	0	66	0.92
17609--17654	18	2.8	17	90	9	69	34	0	0	65	0.93
18256--18349	42	2.3	41	86	1	125	23	22	22	31	1.98
18248--18885	265	2.4	260	88	1	954	28	18	20	32	1.96
18787--18886	42	2.4	42	81	6	114	27	23	18	32	1.97
19275--19324	3	18.0	3	84	12	54	36	0	0	64	0.94
19274--19325	17	3.2	17	81	13	56	38	0	0	61	0.96
19275--19324	20	2.6	20	87	6	68	36	0	0	64	0.94
19294--19331	20	1.9	20	88	0	58	50	0	0	50	1.00
19924--20017	42	2.3	41	86	1	125	23	22	22	31	1.98
19916--20553	265	2.4	260	88	1	954	28	18	20	32	1.96
20455--20554	42	2.4	42	81	6	114	27	23	18	32	1.97
20943--20992	3	18.0	3	84	12	54	36	0	0	64	0.94
20942--20993	17	3.2	17	81	13	56	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20943--20992	20	2.6	20	87	6	68	36	0	0	64	0.94
20962--20999	20	1.9	20	88	0	58	50	0	0	50	1.00
21593--21686	42	2.3	41	86	1	125	23	22	22	31	1.98
21585--22222	265	2.4	260	88	1	936	28	17	20	32	1.96
22612--22661	3	18.0	3	84	12	54	36	0	0	64	0.94
22611--22662	17	3.2	17	81	13	56	38	0	0	61	0.96
22612--22661	20	2.6	20	87	6	68	36	0	0	64	0.94
22631--22668	20	1.9	20	88	0	58	50	0	0	50	1.00
23446--23482	17	2.2	17	100	0	74	27	48	18	5	1.70
24056--24086	2	16.0	2	93	6	55	48	0	0	51	1.00
27150--27232	19	4.4	19	75	11	80	18	14	7	60	1.56
29697--29742	17	2.6	17	83	10	58	78	0	19	2	0.86
32748--32826	42	1.9	41	84	2	104	25	18	22	32	1.97
33234--33304	20	3.5	20	67	16	56	21	21	21	36	1.95
33239--33347	42	2.6	41	83	2	119	23	22	18	35	1.95
33736--33773	3	13.7	3	89	10	55	31	0	0	68	0.90
35603--35650	25	1.9	25	87	8	71	39	6	4	50	1.47
38979--39283	55	5.5	55	82	7	270	31	21	16	30	1.95
38981--39283	110	2.8	108	83	8	371	31	21	16	30	1.95
39299--39442	36	3.9	36	89	1	198	20	20	19	40	1.92
39667--39699	17	1.9	17	88	11	50	30	27	3	39	1.72
40734--40888	7	22.7	7	71	10	72	8	15	0	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40730--40812	31	2.7	29	78	12	94	8	15	0	75	1.02
40734--40820	34	2.6	32	81	15	95	6	17	0	75	1.01
40864--40898	1	35.0	1	88	0	52	5	0	0	94	0.32
40733--40861	20	6.3	20	65	21	61	9	17	0	72	1.10
40831--40898	30	2.5	28	76	21	72	8	7	0	83	0.80
54016--54062	22	2.1	22	100	0	94	31	25	21	21	1.98
54824--54850	10	2.7	10	100	0	54	48	0	0	51	1.00
59166--59215	24	2.1	24	88	7	75	56	0	2	42	1.11
59175--59271	30	3.3	30	81	5	92	57	0	0	42	0.98
59849--59962	52	2.2	52	100	0	228	30	18	21	28	1.97
75097--75143	22	2.1	22	100	0	94	31	25	21	21	1.98
75898--75924	10	2.7	10	100	0	54	48	0	0	51	1.00
80224--80267	19	2.2	20	88	4	63	59	0	0	40	0.98
80237--80312	30	2.5	32	81	10	88	56	0	0	43	0.99
80888--81001	52	2.2	52	100	0	228	30	18	21	28	1.97

Tables:   1

The End!