genome.fa.s3066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003066.1 Hibiscus syriacus cultivar Beakdansim tig00006391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86112

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1229--1288	27	2.1	29	82	14	81	41	0	0	58	0.98
1235--1299	29	2.3	28	84	10	80	44	0	0	55	0.99
1247--1309	28	2.5	24	82	15	65	42	0	0	57	0.99
1401--1448	21	2.3	21	82	7	53	33	0	8	58	1.28
1453--1499	17	2.8	17	80	3	60	42	0	2	55	1.12
1423--1514	28	3.3	27	80	15	91	39	0	3	57	1.15
3105--3165	21	2.9	21	90	4	88	18	36	19	26	1.94
3581--3721	57	2.5	58	79	13	159	32	20	9	36	1.86
3738--3858	63	1.9	63	93	0	206	35	19	0	44	1.56
3992--4584	127	4.8	128	86	6	760	34	22	22	21	1.97
4362--4584	116	1.9	115	86	6	317	33	21	22	21	1.98
5324--5371	23	2.1	23	96	0	87	27	25	25	22	2.00
7003--7044	21	2.0	21	85	0	57	16	26	28	28	1.97
9182--9232	23	2.2	23	96	0	93	37	35	1	25	1.67
10412--10472	23	2.7	23	86	0	86	24	24	27	22	2.00
12151--12194	21	2.1	21	86	0	61	15	27	27	29	1.96
20157--20183	13	2.1	13	100	0	54	48	0	14	37	1.45
21961--22015	24	2.3	24	82	17	71	67	0	12	20	1.23
22070--22124	22	2.7	19	79	17	58	74	1	5	18	1.10
22078--22162	22	4.2	19	76	19	75	72	1	7	18	1.13
22098--22162	18	3.3	18	76	19	60	75	0	6	18	1.00
22181--22235	9	5.9	9	76	16	58	72	0	5	21	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22181--22235	15	3.5	16	78	16	62	72	0	5	21	1.04
22280--22345	29	2.3	30	84	5	82	54	3	4	37	1.36
25059--25104	18	2.6	18	96	0	83	52	8	0	39	1.33
25074--25112	9	4.3	9	81	12	53	56	5	0	38	1.22
27431--27645	105	2.0	105	94	0	376	33	13	22	30	1.93
33004--33068	18	3.5	19	74	16	55	6	18	10	64	1.45
51678--51711	11	3.4	10	88	11	52	26	23	8	41	1.83
55961--56049	45	2.0	45	93	0	151	35	20	12	31	1.89
58921--58963	22	2.0	22	90	0	68	18	23	34	23	1.96
60997--61045	23	2.2	23	85	7	75	18	22	40	18	1.91
72037--72080	20	2.3	19	80	15	54	22	11	2	63	1.38
72106--72163	19	2.9	20	82	5	64	46	0	1	51	1.11
72105--72180	19	3.9	19	71	19	50	47	0	2	50	1.15
72425--72457	16	2.1	16	100	0	66	42	6	18	33	1.75
83651--83690	20	1.9	20	85	10	53	15	7	22	55	1.65

Tables:   1

The End!