genome.fa.s3069.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003069.1 Hibiscus syriacus cultivar Beakdansim tig00006396_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90827

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1413--1456	20	2.3	19	80	15	54	22	11	2	63	1.38
1481--1540	20	3.0	20	75	7	59	43	1	3	51	1.28
18035--18412	55	6.9	55	90	2	589	32	24	16	26	1.96
17966--18412	110	4.1	110	87	1	610	32	23	16	27	1.96
18412--18493	37	2.2	37	86	4	112	19	18	18	43	1.88
19262--19306	23	2.0	23	86	0	63	26	26	26	20	1.99
19421--19489	25	2.8	25	95	0	120	27	26	26	20	1.99
19954--19990	19	1.9	19	88	0	56	10	29	35	24	1.89
21849--22032	28	7.1	28	77	19	106	11	12	0	75	1.05
21877--22014	7	19.7	7	91	5	208	12	11	0	76	1.03
21884--22032	21	7.1	20	87	6	165	13	10	0	75	1.04
37876--37918	18	2.4	18	84	0	59	62	4	27	4	1.35
37886--37921	17	2.1	18	94	5	65	66	5	22	5	1.34
40847--40943	44	2.1	48	86	7	139	27	10	20	41	1.85
50594--50691	27	3.6	27	74	20	78	72	1	20	6	1.12
51823--52360	51	10.4	51	88	4	693	30	14	24	30	1.95
52198--52396	55	3.6	54	84	8	224	30	15	23	31	1.95
51943--52413	51	8.9	54	81	10	223	29	15	25	29	1.96
52199--52424	55	4.1	54	78	11	185	29	15	22	32	1.95
52738--52780	18	2.4	18	84	0	59	62	4	27	4	1.35
52748--52783	17	2.1	18	94	5	65	66	5	22	5	1.34
61062--61102	19	2.2	19	100	0	82	34	7	17	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64629--64676	20	2.4	20	82	0	60	10	29	58	2	1.43
64646--64677	17	1.9	16	93	6	55	9	31	59	0	1.29
75646--75703	14	4.1	14	88	0	80	12	17	17	53	1.73
77091--77177	20	4.3	20	89	0	138	25	28	22	22	1.99
77091--77177	40	2.2	40	95	0	156	25	28	22	22	1.99
77359--77401	22	2.0	22	90	0	68	20	41	18	18	1.90
77799--77851	20	2.7	20	90	0	79	16	18	26	37	1.93
79761--79809	20	2.5	20	86	0	62	38	24	20	16	1.92
79851--79897	20	2.5	19	89	6	69	14	19	27	38	1.91
80383--80484	21	4.9	20	69	15	64	22	33	20	23	1.97
81896--81957	14	4.3	14	73	6	52	38	1	14	45	1.55
82056--82109	20	2.7	20	85	0	72	44	25	18	11	1.83
82152--82430	20	14.9	20	74	14	227	25	17	22	34	1.96
82112--82314	94	2.2	94	88	1	291	26	19	21	33	1.97
82172--82368	74	2.7	74	86	6	274	24	18	23	34	1.96
82266--82418	54	2.8	54	90	0	234	22	16	25	35	1.95
82103--82430	74	4.4	72	72	14	231	25	17	22	34	1.96
82401--82670	140	1.9	140	98	0	522	42	15	13	28	1.85
82730--82764	18	1.9	18	94	0	61	17	2	25	54	1.57
85026--85079	24	2.2	24	90	0	81	40	20	16	22	1.91
85901--85971	20	3.5	20	77	7	72	28	19	21	30	1.97
87304--87386	40	2.1	40	100	0	166	32	12	16	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89647--89765	41	2.9	42	96	1	213	15	19	20	45	1.85
90051--90106	28	2.0	29	85	3	78	50	1	1	46	1.22
90499--90541	14	3.0	14	73	6	50	34	20	4	39	1.74
90485--90523	20	2.0	20	84	0	51	33	17	7	41	1.79
90498--90540	15	2.9	15	75	3	52	34	20	2	41	1.65

Tables:   1

The End!