Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003070.1 Hibiscus syriacus cultivar Beakdansim tig00006399_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57130

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--132
4
34.0
4
93
6
236
25
0
25
48
1.51
159--191
14
2.4
14
100
0
66
30
0
33
36
1.58
704--766
30
2.1
31
84
3
83
44
6
4
44
1.50
3772--3831
27
2.2
28
82
8
70
31
5
3
60
1.35
7910--7990
32
2.5
32
92
4
128
37
22
20
19
1.95
13032--13075
22
2.0
22
90
0
70
31
4
11
52
1.57
13825--13878
24
2.2
24
78
12
58
37
5
0
57
1.22
14948--14991
22
2.1
20
83
8
52
43
4
4
47
1.44
28441--29085
51
12.3
51
89
5
654
28
27
16
27
1.97
28458--29085
153
4.0
154
89
3
735
27
27
16
28
1.97
30396--30434
15
2.7
14
84
7
51
7
12
0
79
0.93
30396--30466
17
4.4
16
71
13
56
7
12
0
80
0.90
30407--30472
27
2.5
27
86
13
86
7
10
0
81
0.86
30396--30461
15
4.5
15
70
24
50
6
13
0
80
0.89
30424--30510
34
2.6
33
78
8
88
9
12
1
77
1.06
44228--44325
44
2.1
47
87
7
139
26
11
22
39
1.87
53913--53969
15
3.8
14
80
17
53
80
0
17
1
0.79
53926--53963
9
4.2
9
89
0
58
84
0
15
0
0.63
53910--53969
16
3.6
17
86
13
90
80
0
18
1
0.80
53913--54002
25
3.7
25
77
11
80
76
1
18
3
0.98
53914--53969
9
6.7
9
74
25
52
80
0
17
1
0.80
53913--53961
15
3.1
15
80
16
55
79
0
18
2
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53946--54045
40
2.5
38
80
13
112
72
1
22
5
1.10
53913--54039
16
7.9
15
68
24
73
74
0
21
3
1.03
53914--54045
24
5.4
24
73
18
78
73
0
21
4
1.06
55329--55779
50
9.0
51
93
3
745
30
15
27
26
1.96
55545--55901
49
6.9
54
84
9
231
29
17
26
27
1.97
55394--55890
100
4.9
104
84
8
310
29
17
26
26
1.97
55744--55901
53
2.9
55
88
8
220
25
19
25
29
1.99

Tables:   1

The End!