genome.fa.s3071.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003071.1 Hibiscus syriacus cultivar Beakdansim tig00006400_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53901

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--734	200	3.7	197	80	8	766	36	13	16	33	1.88
774--806	15	2.1	16	88	5	50	48	27	6	18	1.71
1034--1066	18	1.9	17	88	11	50	30	36	0	33	1.58
2160--2209	3	16.7	3	78	0	55	42	2	30	26	1.66
3520--3572	24	2.2	24	89	0	79	37	1	13	47	1.54
3803--4557	198	3.8	197	81	8	867	40	12	15	31	1.85
3800--4562	197	3.8	198	82	7	931	40	12	15	31	1.85
8197--8719	199	2.6	200	84	5	668	39	13	14	31	1.86
8720--8882	87	1.9	87	96	0	299	33	15	11	40	1.82
8796--8854	23	2.6	23	88	0	91	33	18	6	40	1.77
8967--8995	13	2.2	13	100	0	58	24	24	31	20	1.98
18812--18867	15	3.6	15	76	9	58	39	12	12	35	1.81
18815--18848	17	2.0	17	94	0	59	32	11	11	44	1.77
18909--19017	33	3.4	33	91	3	170	45	14	8	31	1.74
19006--19047	21	2.0	21	90	0	66	50	7	11	30	1.66
21427--21465	19	2.0	20	85	5	53	46	17	15	20	1.84
23558--23615	20	2.8	20	82	7	55	46	10	6	36	1.65
34136--34211	31	2.4	31	80	2	89	26	31	27	14	1.95
34089--34211	63	2.0	63	82	6	151	25	29	28	17	1.97
37014--37051	17	2.4	16	91	8	60	26	26	34	13	1.93
37014--37054	8	5.1	8	81	18	50	24	26	34	14	1.94
37054--37102	13	3.8	13	88	0	71	16	16	46	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37041--37076	18	2.0	18	94	0	63	11	22	47	19	1.80
39205--39280	31	2.4	31	80	2	89	26	31	27	14	1.95
39158--39280	63	2.0	63	82	6	151	25	29	28	17	1.97
42096--42130	7	4.6	8	92	7	56	22	25	37	14	1.92
42097--42127	15	2.1	14	94	5	53	25	25	35	12	1.92
42130--42166	13	2.8	13	83	0	56	13	21	45	18	1.84
42117--42171	18	3.3	18	71	23	66	12	21	47	18	1.82
44388--44413	2	13.0	2	100	0	52	50	0	50	0	1.00

Tables:   1

The End!