Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003073.1 Hibiscus syriacus cultivar Beakdansim tig00006407_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61684
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:11361 original size:22 final size:22
Alignment explanation
Indices: 11333--11379 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
11323 AAAAGGATTT
11333 GGACCCACTAGCTATGATACTA
1 GGACCCACTAGCTATGATACTA
11355 GGACCCACTAGCTATGATACTA
1 GGACCCACTAGCTATGATACTA
11377 GGA
1 GGA
11380 ACCATAAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (22 bp):
GGACCCACTAGCTATGATACTA
Found at i:11739 original size:9 final size:9
Alignment explanation
Indices: 11725--11754 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
11715 CAATAATGAA
11725 GATTTTGAT
1 GATTTTGAT
11734 GATTTTGAT
1 GATTTTGAT
11743 GATTTTGAT
1 GATTTTGAT
11752 GAT
1 GAT
11755 GATGACAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.53
Consensus pattern (9 bp):
GATTTTGAT
Found at i:12166 original size:10 final size:10
Alignment explanation
Indices: 12151--12177 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
12141 TACAACTTCC
12151 TATATTAAAT
1 TATATTAAAT
12161 TATATTAAAT
1 TATATTAAAT
12171 TATATTA
1 TATATTA
12178 CAAATAATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TATATTAAAT
Found at i:16510 original size:24 final size:24
Alignment explanation
Indices: 16483--16532 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
16473 CAAAAAAATA
*
16483 TAATTAGTTTAAA-AAATAATTAAT
1 TAATTAATTTAAATAAATAA-TAAT
16507 TAATTAATTTAAATAAATAATAAT
1 TAATTAATTTAAATAAATAATAAT
16531 TA
1 TA
16533 TATAAATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
TAATTAATTTAAATAAATAATAAT
Found at i:16559 original size:30 final size:30
Alignment explanation
Indices: 16492--16588 Score: 92
Period size: 30 Copynumber: 3.3 Consensus size: 30
16482 ATAATTAGTT
* * *
16492 TAAAAAATAATTA-ATTAAT-TAATTTAAA
1 TAAAAAATAATTATATAAATATTATTTTAA
*
16520 TAAATAATAATTATATAAATATTATTTTAA
1 TAAAAAATAATTATATAAATATTATTTTAA
* * *
16550 TAAAAAATAA-TATTTATATAATTATATTAA
1 TAAAAAATAATTATATAAAT-ATTATTTTAA
*
16580 TATAAAATA
1 TAAAAAATA
16589 TAAAAACTAT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
28 12 0.21
29 12 0.21
30 33 0.58
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (30 bp):
TAAAAAATAATTATATAAATATTATTTTAA
Found at i:17239 original size:52 final size:52
Alignment explanation
Indices: 17161--17274 Score: 228
Period size: 52 Copynumber: 2.2 Consensus size: 52
17151 CTTCTATTTG
17161 ATACGAAATTGGACGACTTTGTTGCAGTAAACCATCAGTAGGTGTCCTAGCT
1 ATACGAAATTGGACGACTTTGTTGCAGTAAACCATCAGTAGGTGTCCTAGCT
17213 ATACGAAATTGGACGACTTTGTTGCAGTAAACCATCAGTAGGTGTCCTAGCT
1 ATACGAAATTGGACGACTTTGTTGCAGTAAACCATCAGTAGGTGTCCTAGCT
17265 ATACGAAATT
1 ATACGAAATT
17275 ATGGTTTCAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (52 bp):
ATACGAAATTGGACGACTTTGTTGCAGTAAACCATCAGTAGGTGTCCTAGCT
Found at i:18921 original size:2 final size:2
Alignment explanation
Indices: 18916--18950 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
18906 TTGTACATAA
*
18916 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
18951 CCTAGAGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:23420 original size:2 final size:2
Alignment explanation
Indices: 23413--23444 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
23403 TATAGATGTA
23413 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23445 TTTAAAATGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28070 original size:76 final size:75
Alignment explanation
Indices: 27939--28120 Score: 208
Period size: 75 Copynumber: 2.4 Consensus size: 75
27929 TTATGGTTCA
* * * *
27939 CAACTTATTTCTTAGTGAACTATGATATTCTTGAGGCAACCCATTTTATTAATAAAAA-ATTAGT
1 CAACATATTTCTTAGTGAACCATGACATTTTTGAGGCAACCCATTTTATTAATAAAAATATTA--
**
28003 ATTCCAGATC-T
64 ACACCAGATCGT
* * * * *
28014 CAACCTATTTCTGAGTGAACCATGACATTTTTGGGTGTAACCTATTTTATTAATAAAAATATTAA
1 CAACATATTTCTTAGTGAACCATGACATTTTTGAG-GCAACCCATTTTATTAATAAAAATATTAA
*
28079 CACTAGATCGT
65 CACCAGATCGT
28090 -AACATATTTCTTAGTGAACCATGACATTTTT
1 CAACATATTTCTTAGTGAACCATGACATTTTT
28121 TTGTGCAACT
Statistics
Matches: 91, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
75 65 0.71
76 22 0.24
77 4 0.04
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (75 bp):
CAACATATTTCTTAGTGAACCATGACATTTTTGAGGCAACCCATTTTATTAATAAAAATATTAAC
ACCAGATCGT
Found at i:29040 original size:2 final size:2
Alignment explanation
Indices: 29033--29059 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
29023 AATTAAAATT
29033 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
29060 GTGTGTGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:29064 original size:2 final size:2
Alignment explanation
Indices: 29059--29095 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
29049 TATATATATA
29059 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
29096 ATCGGATTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:29421 original size:22 final size:19
Alignment explanation
Indices: 29393--29439 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
29383 TGGAATTAAG
29393 TGTATAAATTCTATTTTTCTTT
1 TGTATAAATTC--TTTTTC-TT
*
29415 TGTATAAGTTCTTTTTCTT
1 TGTATAAATTCTTTTTCTT
29434 TGTATA
1 TGTATA
29440 CTTATGTATC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 8 0.33
20 6 0.25
22 10 0.42
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.62
Consensus pattern (19 bp):
TGTATAAATTCTTTTTCTT
Found at i:29583 original size:30 final size:31
Alignment explanation
Indices: 29547--29605 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
29537 AATTTTTTTC
* * *
29547 AAAAATAAAAGTTTATTATT-TAATTACATA
1 AAAAATAAAAATTTAATATTCAAATTACATA
29577 AAAAATAAAAATTTAATATTCAAATTACA
1 AAAAATAAAAATTTAATATTCAAATTACA
29606 CCATAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 18 0.72
31 7 0.28
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.36
Consensus pattern (31 bp):
AAAAATAAAAATTTAATATTCAAATTACATA
Found at i:32268 original size:15 final size:16
Alignment explanation
Indices: 32224--32272 Score: 66
Period size: 15 Copynumber: 3.2 Consensus size: 16
32214 AACCAATATC
32224 AAAATCAGTAAACAAT
1 AAAATCAGTAAACAAT
**
32240 AAAATCA-TCTACAAT
1 AAAATCAGTAAACAAT
32255 AAAA-CAGTAAACAAT
1 AAAATCAGTAAACAAT
32270 AAA
1 AAA
32273 CATATAATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
14 2 0.07
15 19 0.68
16 7 0.25
ACGTcount: A:0.63, C:0.14, G:0.04, T:0.18
Consensus pattern (16 bp):
AAAATCAGTAAACAAT
Found at i:32313 original size:29 final size:29
Alignment explanation
Indices: 32271--32340 Score: 131
Period size: 29 Copynumber: 2.4 Consensus size: 29
32261 GTAAACAATA
32271 AACATATAATCATATGCATACTAATTATT
1 AACATATAATCATATGCATACTAATTATT
*
32300 AACATATAATCATATGCATTCTAATTATT
1 AACATATAATCATATGCATACTAATTATT
32329 AACATATAATCA
1 AACATATAATCA
32341 ATAAAACAGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.37
Consensus pattern (29 bp):
AACATATAATCATATGCATACTAATTATT
Found at i:32358 original size:16 final size:17
Alignment explanation
Indices: 32339--32384 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 17
32329 AACATATAAT
32339 CAATAAAA-CAGTAAAC
1 CAATAAAATCAGTAAAC
32355 CAATATCAAAATCAGTAAA-
1 C-A-AT-AAAATCAGTAAAC
32374 CAATAAAATCA
1 CAATAAAATCA
32385 TTTCCAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
16 8 0.31
17 3 0.12
18 3 0.12
19 5 0.19
20 7 0.27
ACGTcount: A:0.61, C:0.17, G:0.04, T:0.17
Consensus pattern (17 bp):
CAATAAAATCAGTAAAC
Found at i:33704 original size:64 final size:63
Alignment explanation
Indices: 33622--33779 Score: 185
Period size: 64 Copynumber: 2.5 Consensus size: 63
33612 TTTAAGGTGA
* * * *
33622 ATCGATGCACATGCAGTGCATCGATGCAT-TAATTTAAAAAGAAAACATCGAATAGGATTTATGC
1 ATCGATGCATAAGGAGTGCATCGATGCATCCAA-TTAAAAA-AAAACATCGAATAGGATTTATGC
* * *
33686 ATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATACAAACATCGAATAGGATTTATGC
1 ATCGATGCATAAGGAGTGCATCGATGCAT-CCAATTAAAAAAAAACATCGAATAGGATTTATGC
*
33750 ATCGATGCAT-GGTGTAGTGCATCGATGCAT
1 ATCGATGCATAAG-G-AGTGCATCGATGCAT
33780 ACCTTCATTA
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
63 1 0.01
64 59 0.72
65 21 0.26
66 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.27
Consensus pattern (63 bp):
ATCGATGCATAAGGAGTGCATCGATGCATCCAATTAAAAAAAAACATCGAATAGGATTTATGC
Found at i:34276 original size:2 final size:2
Alignment explanation
Indices: 34269--34303 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
34259 CATGAGTTAG
*
34269 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
34304 GGAATTGTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:34999 original size:31 final size:30
Alignment explanation
Indices: 34961--35048 Score: 113
Period size: 31 Copynumber: 2.8 Consensus size: 30
34951 TCGAGGGTTT
**
34961 TACCTATGTCTTTCGAGACATATGGACAGTA
1 TACCTATGTCTAACGA-ACATATGGACAGTA
*
34992 TACCTATGTTCTAAGGAACATATGGACAGTA
1 TACCTATG-TCTAACGAACATATGGACAGTA
*
35023 TACCTATGTTCTAAGGAACATATGGA
1 TACCTATG-TCTAACGAACATATGGA
35049 TATTTTACCT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
31 48 0.91
32 5 0.09
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (30 bp):
TACCTATGTCTAACGAACATATGGACAGTA
Found at i:35065 original size:31 final size:31
Alignment explanation
Indices: 34978--35048 Score: 142
Period size: 31 Copynumber: 2.3 Consensus size: 31
34968 GTCTTTCGAG
34978 ACATATGGACAGTATACCTATGTTCTAAGGA
1 ACATATGGACAGTATACCTATGTTCTAAGGA
35009 ACATATGGACAGTATACCTATGTTCTAAGGA
1 ACATATGGACAGTATACCTATGTTCTAAGGA
35040 ACATATGGA
1 ACATATGGA
35049 TATTTTACCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (31 bp):
ACATATGGACAGTATACCTATGTTCTAAGGA
Found at i:35104 original size:30 final size:30
Alignment explanation
Indices: 35070--35134 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
35060 GGTTCTTCGG
35070 GACCTATAGACAGTTACCGAGGATCTTTAT
1 GACCTATAGACAGTTACCGAGGATCTTTAT
* * *
35100 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTATAGACAGTTACCGAGGATCTTTAT
35130 GACCT
1 GACCT
35135 CTGGATAGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (30 bp):
GACCTATAGACAGTTACCGAGGATCTTTAT
Found at i:35135 original size:30 final size:30
Alignment explanation
Indices: 35081--35142 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
35071 ACCTATAGAC
35081 AGTTACCGAGGATCTTTATGACCTCTGGAT
1 AGTTACCGAGGATCTTTATGACCTCTGGAT
35111 AGTTACCGAGGATCTTTATGACCTCTGGAT
1 AGTTACCGAGGATCTTTATGACCTCTGGAT
35141 AG
1 AG
35143 GTCCTTCGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (30 bp):
AGTTACCGAGGATCTTTATGACCTCTGGAT
Found at i:38440 original size:64 final size:63
Alignment explanation
Indices: 38355--38495 Score: 185
Period size: 64 Copynumber: 2.2 Consensus size: 63
38345 TTGTTTAAGG
* * *
38355 TGCATCGATGCACATGCAGTGCATCGATGCAT-TAATTTAAAAAGAAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGCAGTGCATCGATGCATCCAA-TTAAAAA-AAAACATCGAATAGGATTTA
* * * *
38419 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATACAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGCAGTGCATCGATGCAT-CCAATTAAAAAAAAACATCGAATAGGATTTA
38483 TGCATCGATGCAT
1 TGCATCGATGCAT
38496 GGTGTAGTGC
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
64 61 0.90
65 6 0.09
66 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (63 bp):
TGCATCGATGCATAAGCAGTGCATCGATGCATCCAATTAAAAAAAAACATCGAATAGGATTTA
Found at i:39012 original size:2 final size:2
Alignment explanation
Indices: 39005--39037 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
38995 CATGAGTTAG
39005 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
39038 GGAATTGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:39733 original size:31 final size:31
Alignment explanation
Indices: 39712--39799 Score: 158
Period size: 31 Copynumber: 2.8 Consensus size: 31
39702 GTCTTTCGAG
39712 ACATATGGACAGTATACCTATGTTCTAAGGA
1 ACATATGGACAGTATACCTATGTTCTAAGGA
39743 ACATATGGACAGTATACCTATGTTCTAAGGA
1 ACATATGGACAGTATACCTATGTTCTAAGGA
* *
39774 ACATATGGACAGTTTACCTAGGTTCT
1 ACATATGGACAGTATACCTATGTTCT
39800 TCGGGACCTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 55 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (31 bp):
ACATATGGACAGTATACCTATGTTCTAAGGA
Found at i:39838 original size:30 final size:30
Alignment explanation
Indices: 39804--39868 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
39794 GGTTCTTCGG
39804 GACCTATAGACAGTTACCGAGGATCTTTAT
1 GACCTATAGACAGTTACCGAGGATCTTTAT
* * *
39834 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTATAGACAGTTACCGAGGATCTTTAT
39864 GACCT
1 GACCT
39869 CTGGATAGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (30 bp):
GACCTATAGACAGTTACCGAGGATCTTTAT
Found at i:39869 original size:30 final size:30
Alignment explanation
Indices: 39815--39876 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
39805 ACCTATAGAC
39815 AGTTACCGAGGATCTTTATGACCTCTGGAT
1 AGTTACCGAGGATCTTTATGACCTCTGGAT
39845 AGTTACCGAGGATCTTTATGACCTCTGGAT
1 AGTTACCGAGGATCTTTATGACCTCTGGAT
39875 AG
1 AG
39877 GTCCTTCGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (30 bp):
AGTTACCGAGGATCTTTATGACCTCTGGAT
Found at i:58083 original size:18 final size:18
Alignment explanation
Indices: 58041--58075 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
58031 TAATATTCTA
*
58041 ATTTTAATCGAATATAAT
1 ATTTAAATCGAATATAAT
58059 ATTTAAATCGAATATAA
1 ATTTAAATCGAATATAA
58076 ATCTTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.40
Consensus pattern (18 bp):
ATTTAAATCGAATATAAT
Done.