genome.fa.s3074.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003074.1 Hibiscus syriacus cultivar Beakdansim tig00006408_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120092

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--178	36	4.8	36	80	5	208	36	21	18	23	1.95
165--1089	215	4.2	213	80	10	989	32	15	20	31	1.94
752--854	42	2.5	42	85	6	145	23	21	23	32	1.98
837--889	20	2.7	20	90	0	79	26	30	18	24	1.98
623--1090	233	2.0	232	85	6	627	31	15	20	32	1.94
994--1090	41	2.4	41	83	0	131	24	18	23	32	1.97
1192--1286	42	2.3	41	85	8	122	26	22	20	31	1.98
1002--1434	232	1.9	229	85	7	608	31	14	21	32	1.93
1192--1320	41	3.1	44	79	11	132	27	20	21	31	1.98
1609--1669	20	2.9	22	73	7	72	26	19	24	29	1.99
1609--1690	42	2.0	42	87	0	119	26	19	23	30	1.98
5956--6010	21	2.6	21	94	0	92	25	16	23	34	1.95
6026--6076	20	2.6	20	87	3	68	39	17	5	37	1.74
6508--6542	17	2.1	17	94	0	61	34	14	20	31	1.92
11345--11401	28	2.0	28	93	0	96	14	12	15	57	1.65
11578--11671	32	2.9	32	84	4	109	69	6	3	21	1.26
11610--11662	16	3.4	16	80	12	65	77	3	1	16	1.01
11634--11695	23	2.7	23	77	5	72	72	9	3	14	1.23
11647--11704	23	2.3	26	74	17	68	70	8	1	18	1.21
11687--11728	13	3.2	13	89	3	57	64	11	2	21	1.38
13533--13566	16	2.1	17	88	5	52	35	32	14	17	1.91
13647--13954	152	2.0	152	100	0	616	39	16	11	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13689--13985	152	2.0	150	88	5	390	42	15	10	31	1.81
14144--14173	16	1.9	15	93	6	51	63	0	0	36	0.95
14140--14183	21	2.2	20	87	4	61	68	0	0	31	0.90
19593--19670	2	39.0	2	100	0	156	50	0	0	50	1.00
20484--20518	18	1.9	18	94	0	61	62	5	0	31	1.18
20692--20739	8	5.9	8	83	13	62	70	2	0	27	0.98
20747--20777	16	1.9	16	93	0	53	67	0	6	25	1.14
20998--21064	35	1.9	35	87	0	98	20	32	14	31	1.93
21363--21394	2	16.0	2	100	0	64	50	0	0	50	1.00
24743--24786	18	2.4	18	85	7	63	0	29	4	65	1.12
27185--27238	17	3.2	17	72	0	54	31	0	3	64	1.11
28769--28816	21	2.3	21	85	0	60	25	41	12	20	1.87
28820--28913	21	4.5	21	89	5	136	18	32	27	21	1.96
29281--29387	34	3.2	33	78	7	108	57	2	2	37	1.28
29740--30040	128	2.4	128	97	0	575	32	21	23	22	1.98
32529--32848	159	2.0	159	98	1	615	48	8	5	37	1.56
33335--33400	21	3.2	21	64	23	59	27	27	12	33	1.92
33328--33409	40	2.0	40	97	0	155	25	28	13	32	1.93
34966--35338	36	10.5	36	84	2	432	33	22	24	19	1.97
37670--37735	23	2.9	23	84	2	89	45	15	24	15	1.84
42525--42585	29	2.1	29	100	0	122	29	39	14	16	1.88
46431--46461	11	2.8	11	95	0	53	29	22	9	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50922--50952	11	2.8	11	95	0	53	29	22	9	38	1.86
51913--51942	3	10.0	3	92	0	51	33	3	0	63	1.11
54155--54186	6	5.3	6	92	0	55	50	3	34	12	1.56
62613--62676	31	2.1	31	81	0	74	43	12	17	26	1.84
63479--63517	16	2.4	16	84	12	53	79	2	5	12	1.00
65179--65245	10	6.0	10	71	21	53	59	17	10	11	1.60
65179--65245	24	2.9	23	88	2	98	59	17	10	11	1.60
65608--65642	3	12.0	3	93	6	63	31	0	0	68	0.90
65606--65656	23	2.2	22	80	16	59	35	0	0	64	0.94
66867--66939	21	3.4	21	71	21	71	28	2	1	67	1.13
66858--66939	43	2.0	42	81	13	100	29	3	1	65	1.17
66955--66998	2	22.0	2	95	0	79	52	0	0	47	1.00
67859--67888	15	1.9	16	93	6	53	30	6	3	60	1.39
68384--68471	46	1.9	46	88	4	133	38	12	19	29	1.88
69186--69269	43	1.9	44	85	2	116	33	11	21	33	1.90
69346--69402	6	8.7	7	83	12	52	15	14	12	57	1.65
69349--69435	31	2.8	31	83	10	88	17	10	9	63	1.51
76425--76506	12	6.8	12	76	5	67	52	17	12	18	1.74
76425--76477	24	2.2	24	89	0	88	56	15	13	15	1.67
85206--85249	21	2.1	21	83	4	54	22	18	36	22	1.95
86620--86716	3	33.0	3	74	15	78	31	2	2	63	1.17
86624--86708	8	11.1	8	73	16	58	31	1	2	64	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87366--87432	32	2.1	32	97	0	125	14	22	46	16	1.84
88068--88138	29	2.5	30	74	21	71	32	2	4	60	1.30
90751--91131	54	7.1	54	85	1	494	36	12	24	26	1.91
90751--91131	162	2.4	162	93	0	654	36	12	24	26	1.91
91498--91566	22	3.1	22	87	0	102	34	15	11	37	1.84
91935--92502	122	4.8	113	84	7	541	39	14	19	26	1.90
92049--92499	122	3.7	122	89	2	638	40	14	19	25	1.90
91937--92499	244	2.3	245	83	6	708	40	14	18	25	1.90
94118--94172	29	1.9	29	85	3	76	40	3	0	56	1.17
94197--94477	148	1.9	148	85	4	388	39	7	6	47	1.56
94774--94813	16	2.4	17	87	4	55	30	10	0	60	1.30
98856--98902	20	2.3	20	92	0	76	21	12	8	57	1.62

Tables:   1

The End!