Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003076.1 Hibiscus syriacus cultivar Beakdansim tig00006414_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167291

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17216--17327
35
3.1
35
85
2
125
33
3
33
30
1.75
22942--23027
35
2.5
35
86
0
109
27
3
37
31
1.74
26280--26324
11
4.0
11
80
5
54
77
0
13
8
0.98
39171--39223
23
2.3
24
75
15
58
43
9
0
47
1.36
42568--42613
24
1.9
24
81
0
56
23
23
10
41
1.86
48380--48435
28
2.1
26
83
9
69
67
12
12
7
1.40
48416--48447
14
2.1
16
88
11
50
84
0
15
0
0.63
56169--56559
195
2.0
195
95
0
710
28
19
16
35
1.93
60832--60882
26
1.9
26
84
11
68
5
13
13
66
1.42
60832--60893
26
2.3
26
81
10
63
8
12
11
67
1.41
85603--85645
21
2.0
21
100
0
86
27
18
9
44
1.80
89679--89703
2
12.5
2
100
0
50
48
0
0
52
1.00
94089--94152
28
2.2
29
83
2
76
10
15
12
60
1.58
106817--106867
20
2.6
20
87
3
68
37
13
5
43
1.69
109756--109806
19
2.5
20
84
9
59
47
5
11
35
1.65
113596--113636
22
1.9
21
85
5
55
41
31
2
24
1.68
116025--116073
19
2.5
20
86
3
64
46
6
14
32
1.69
116923--116966
19
2.4
18
85
7
54
45
15
18
20
1.85
117847--117898
16
3.2
17
82
12
65
76
0
19
3
0.93
118114--118145
12
2.4
14
85
15
50
12
28
0
59
1.34
119511--119561
21
2.5
20
90
6
77
31
11
7
49
1.68
126189--126244
19
2.8
20
73
13
53
42
1
5
50
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
126211--126327
24
4.4
25
77
19
105
43
0
5
50
1.30
126236--126294
17
3.6
17
64
13
52
44
0
6
49
1.29
126208--126326
28
4.3
28
81
17
117
44
0
5
49
1.30
126270--126372
24
4.5
23
79
11
104
42
2
2
51
1.31
126370--126400
7
4.4
7
100
0
62
12
0
0
87
0.55
146895--146948
18
3.1
17
83
2
54
40
0
7
51
1.30
146909--146953
18
2.5
18
85
0
54
40
0
6
53
1.27
146921--146958
12
3.2
12
81
7
51
39
0
7
52
1.31
146919--146970
23
2.3
22
83
9
68
38
1
7
51
1.42
147005--147078
34
2.1
35
90
9
116
44
0
9
45
1.36
146995--147078
36
2.3
36
84
9
109
42
0
8
48
1.33
147117--147156
10
4.3
10
78
15
50
47
0
2
50
1.14
153163--154013
108
7.6
109
70
13
512
38
12
14
34
1.84
153079--154018
226
4.2
226
84
3
1146
38
12
13
34
1.84
153501--153905
118
3.5
116
73
10
364
38
12
14
34
1.85
154490--154940
229
2.0
229
88
1
681
37
18
6
37
1.77
155349--155400
21
2.5
21
96
0
95
30
15
21
32
1.94
155622--155724
20
5.1
20
73
17
79
25
21
12
40
1.88
157312--157531
22
10.1
23
66
21
95
38
8
1
51
1.42
157316--157367
7
7.1
7
74
8
50
34
3
0
61
1.14
157318--157644
8
42.4
8
65
18
63
37
8
1
51
1.42
157312--157419
44
2.5
42
79
10
105
36
8
1
53
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
157390--157644
36
7.0
37
71
17
160
39
8
1
50
1.42
157404--157561
2
79.5
2
68
15
69
41
8
1
48
1.41
157544--157600
19
3.1
19
78
14
66
36
10
1
50
1.47
158461--158520
26
2.3
26
97
2
113
31
3
61
3
1.28
160032--160070
21
1.9
21
89
5
62
56
7
10
25
1.59
167159--167255
51
1.9
51
85
2
133
63
1
7
27
1.27
167240--167291
22
2.3
23
83
9
72
78
1
1
17
0.93
167237--167291
16
3.6
14
83
16
65
80
1
1
16
0.90

Tables:   1

The End!