genome.fa.s3079.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003079.1 Hibiscus syriacus cultivar Beakdansim tig00006419_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96502

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1703--1776	2	37.5	2	97	2	141	50	0	0	50	1.00
1767--1836	33	2.1	33	84	10	88	55	8	5	30	1.53
1997--2041	22	2.0	23	82	4	56	75	0	4	20	0.97
2250--2362	59	1.9	59	82	10	142	62	2	5	29	1.30
2740--2811	35	2.1	35	89	0	108	29	19	8	43	1.80
5107--5153	12	3.6	14	72	21	57	55	8	19	17	1.67
9675--9712	20	1.9	20	88	0	58	57	10	7	23	1.58
9762--9957	30	6.6	29	75	10	119	57	12	13	16	1.65
9775--9950	60	2.9	60	78	5	185	57	12	13	17	1.65
10472--10520	2	24.5	2	91	0	80	46	0	53	0	1.00
11290--11320	3	10.3	3	100	0	62	67	0	0	32	0.91
12561--12748	95	2.0	95	88	0	277	34	16	21	27	1.95
13110--13377	55	4.9	55	82	2	326	32	18	20	28	1.96
15266--15318	22	2.5	22	87	6	74	35	16	20	26	1.94
15190--15412	95	2.3	95	85	4	281	34	16	22	26	1.95
15771--15916	55	2.7	55	82	4	161	29	17	20	32	1.95
21121--21239	32	3.8	32	84	7	163	33	16	17	31	1.93
21071--21257	32	5.9	32	77	9	154	32	19	18	29	1.96
21069--21257	64	3.0	64	81	7	226	32	19	18	29	1.96
28820--28900	34	2.4	34	89	0	126	30	23	17	28	1.97
29330--29489	55	2.9	54	88	1	212	33	19	18	29	1.95
30291--30430	38	3.8	37	81	11	146	34	12	15	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30575--30643	33	2.1	33	91	0	111	30	18	17	33	1.94
31696--31791	15	5.9	15	73	20	59	3	15	6	75	1.14
31691--31755	20	3.2	21	84	4	80	6	12	3	78	1.05
31699--31760	17	3.6	17	74	23	58	4	14	4	75	1.13
31684--31790	41	2.6	41	75	10	103	3	15	4	75	1.11
36197--36280	3	27.7	3	95	2	150	64	0	0	35	0.94
43852--43994	72	2.0	73	86	4	200	32	21	18	27	1.97
44081--44105	2	12.5	2	100	0	50	48	0	0	52	1.00
47433--47504	30	2.4	30	90	0	108	41	2	34	20	1.67
48408--48435	2	14.0	2	100	0	56	50	0	0	50	1.00
50975--51005	2	15.5	2	100	0	62	51	0	0	48	1.00
54678--54723	24	1.9	24	81	0	56	63	13	4	19	1.46
54908--54957	24	2.1	24	92	0	82	62	10	10	18	1.54
60140--60221	29	2.8	29	94	1	137	32	14	9	42	1.79
60568--60592	10	2.5	10	100	0	50	24	56	20	0	1.43
61346--61375	15	2.0	15	93	0	51	56	23	0	20	1.42
64737--64818	29	2.8	29	94	1	137	32	14	9	42	1.79
73692--73847	65	2.4	64	79	5	163	32	17	20	29	1.95
74187--74220	12	2.7	13	86	9	52	38	5	11	44	1.65
76554--76604	20	2.5	21	81	9	61	66	15	0	17	1.25
77005--77111	44	2.4	44	87	6	155	28	19	20	30	1.97
80721--80760	20	2.0	21	85	5	55	27	15	10	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82810--82964	65	2.4	64	82	3	195	31	18	21	29	1.96
87460--87497	17	2.2	17	90	9	60	34	15	13	36	1.87
89931--89995	32	2.0	32	96	0	121	40	3	7	49	1.47
90166--90205	21	1.9	21	85	10	55	45	0	2	52	1.14
90358--90392	18	1.9	18	100	0	70	48	0	0	51	1.00
90360--90402	15	2.8	15	85	3	59	53	0	0	46	1.00
90358--90418	21	3.0	21	76	13	65	50	0	0	49	1.00
90518--90578	22	3.0	20	75	17	61	47	0	0	52	1.00
92667--92715	2	24.5	2	100	0	98	51	0	0	48	1.00
94958--94992	14	2.6	13	90	4	52	37	5	11	45	1.64

Tables:   1

The End!