genome.fa.s308.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000308.1 Hibiscus syriacus cultivar Beakdansim tig00000578_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95325

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
840--914	3	25.3	3	72	8	55	54	2	1	41	1.23
840--872	11	2.8	12	90	9	59	57	0	0	42	0.98
3036--3358	169	1.9	170	92	0	540	37	12	13	37	1.82
3608--3688	35	2.4	34	81	10	103	46	6	0	46	1.27
18206--18313	54	2.0	54	100	0	216	24	14	29	31	1.95
18575--18647	29	2.5	29	84	0	83	20	39	26	13	1.90
18605--18663	29	2.0	29	86	0	82	23	32	35	8	1.85
18887--18962	29	2.6	29	81	4	91	14	26	39	19	1.90
20208--20247	21	1.9	21	84	0	53	37	5	17	40	1.72
24105--24323	57	3.8	57	92	1	332	24	13	37	24	1.91
24275--24478	33	6.5	33	75	11	194	25	13	35	25	1.92
24218--24763	90	6.2	90	68	11	329	24	12	36	26	1.91
24299--24991	57	12.0	57	86	3	796	24	12	36	26	1.91
24456--24502	24	2.0	24	86	0	67	25	10	36	27	1.89
24488--24592	33	3.5	33	66	22	93	22	11	39	26	1.88
24650--24763	33	3.7	33	71	20	120	25	13	35	26	1.92
24684--24730	24	2.0	24	86	0	67	25	10	36	27	1.89
24741--24787	24	2.0	24	86	0	67	25	10	36	27	1.89
24773--24934	33	5.5	33	65	24	99	22	12	38	26	1.90
24945--25015	33	2.2	33	86	0	97	29	9	36	23	1.87
24888--25054	90	1.9	90	82	2	210	24	14	39	20	1.91
25125--25183	24	2.5	24	91	0	91	25	15	40	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35097--35155	25	2.4	25	97	0	109	49	5	11	33	1.62
35304--35372	30	2.2	30	82	15	86	36	5	17	40	1.74
35313--35372	29	2.0	31	90	6	97	35	6	16	41	1.75
38076--38117	21	2.0	21	95	0	75	23	21	28	26	1.99
38146--38185	20	1.9	21	85	10	55	37	37	10	15	1.80
39846--39875	13	2.3	13	94	0	51	3	10	6	80	1.01
39933--39969	13	2.7	14	87	8	58	67	0	2	29	1.04
44428--44547	3	41.0	3	82	11	151	30	1	1	65	1.12
44974--45014	21	1.9	22	85	5	57	65	7	19	7	1.41
45676--45724	21	2.4	20	83	12	64	32	6	2	59	1.34
45740--45777	18	2.2	17	86	9	51	34	0	0	65	0.93
45776--45805	14	2.1	14	100	0	60	33	6	6	53	1.53
50116--50147	15	2.1	15	94	0	55	28	18	3	50	1.62
57486--57542	23	2.4	24	83	13	66	80	1	8	8	0.97
58142--58245	54	1.9	54	94	0	181	32	14	24	28	1.94
58613--58697	22	3.9	22	88	0	116	37	15	12	34	1.86
59074--59723	244	2.7	239	83	8	790	40	14	18	26	1.89
59188--59723	122	4.4	121	86	4	686	40	14	18	26	1.89
60106--60205	3	35.0	3	80	13	122	32	1	1	66	1.05
60106--60199	41	2.1	46	84	13	135	30	1	1	67	1.05
60227--60257	16	1.9	16	93	0	53	45	38	3	12	1.59
61343--61391	21	2.4	20	86	6	71	34	6	0	59	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61411--61448	18	2.2	17	86	9	51	34	0	0	65	0.93
61447--61476	14	2.1	14	100	0	60	33	6	6	53	1.53
64024--64075	26	2.0	26	84	0	68	44	11	42	1	1.51
64238--64290	28	1.9	27	88	3	79	66	0	5	28	1.15
64248--64290	14	3.1	14	81	15	54	67	0	6	25	1.15
64248--64290	18	2.3	18	88	4	59	67	0	6	25	1.15
69533--69585	3	17.3	3	96	3	97	32	0	0	67	0.91
76921--76960	19	2.1	19	85	0	53	55	15	15	15	1.71
78580--78617	15	2.5	15	100	0	76	15	18	34	31	1.92
80032--80060	2	14.5	2	100	0	58	48	0	0	51	1.00
81600--81651	18	2.9	18	100	0	104	28	28	15	26	1.96
81861--81910	25	2.0	24	85	11	66	44	0	0	56	0.99
82106--82143	15	2.6	15	83	4	51	34	2	0	63	1.09
82161--82188	2	14.0	2	100	0	56	50	0	0	50	1.00
83148--83199	25	2.1	25	100	0	104	19	7	26	46	1.77

Tables:   1

The End!