genome.fa.s3080.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003080.1 Hibiscus syriacus cultivar Beakdansim tig00006427_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50755

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416--619	50	4.0	53	83	11	266	32	11	19	37	1.87
13323--13405	20	4.0	21	72	14	64	14	25	33	26	1.94
17133--17172	21	1.9	21	85	10	55	35	10	2	52	1.48
17625--17650	12	2.2	12	100	0	52	0	38	0	61	0.96
18699--18742	18	2.4	18	84	0	52	18	2	36	43	1.63
18458--20987	860	3.0	860	92	2	4332	36	12	20	30	1.90
23843--23958	20	5.9	20	74	17	109	17	29	31	21	1.96
27411--27457	21	2.3	21	85	10	62	38	6	2	53	1.39
29448--29561	21	5.9	20	72	20	100	14	27	35	22	1.93
29448--29563	40	3.0	39	84	15	161	13	27	35	23	1.93
29967--30035	32	2.2	31	89	5	104	36	0	34	28	1.58
29999--30047	25	2.0	25	87	0	71	36	0	32	30	1.58
32633--32693	27	2.2	27	85	2	77	52	0	1	45	1.10
32669--32741	25	2.9	26	78	12	80	53	2	4	39	1.34
34310--34437	43	3.0	43	84	7	120	35	17	20	27	1.95
34343--34437	43	2.2	44	94	3	167	32	20	23	24	1.98
38798--38838	15	2.7	15	92	0	64	70	0	7	21	1.11
40259--40353	29	3.3	26	76	16	82	45	3	3	48	1.34
40315--40573	36	7.2	36	76	14	241	44	5	4	45	1.47
40399--40454	29	1.9	29	96	0	103	46	5	3	44	1.43
40420--40576	73	2.1	75	88	2	237	44	5	2	47	1.38
41190--42073	84	10.7	81	80	7	908	23	21	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41187--42073	165	5.4	165	88	3	1298	23	21	25	29	1.99
41187--42073	330	2.7	330	93	1	1436	23	21	25	29	1.99
43245--43443	95	2.1	95	91	2	328	31	17	18	32	1.94
46961--46999	14	2.9	14	88	3	53	66	0	7	25	1.18
47125--47163	13	3.0	13	88	0	60	87	2	2	7	0.73
48151--48180	16	1.9	15	93	6	51	13	26	40	20	1.89
48397--48425	2	15.0	2	92	7	51	51	0	0	48	1.00
48438--48475	20	1.9	20	88	0	58	50	0	2	47	1.15
48473--48539	26	2.6	26	78	2	73	44	7	2	44	1.47
48487--48738	35	7.3	34	75	15	221	42	5	4	46	1.48
48568--48657	34	3.0	29	77	16	92	45	3	3	47	1.35
48457--48767	135	2.3	135	75	12	310	43	6	4	46	1.47
48489--48738	36	7.2	34	76	13	208	42	6	4	46	1.48
48588--48776	39	5.1	38	76	12	137	43	6	3	46	1.45
49166--49309	40	3.6	39	82	2	164	32	16	22	27	1.96

Tables:   1

The End!