Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003081.1 Hibiscus syriacus cultivar Beakdansim tig00006428_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64975
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:2273 original size:10 final size:10
Alignment explanation
Indices: 2258--2282 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
2248 AATATACCAT
2258 AACTTTACTC
1 AACTTTACTC
2268 AACTTTACTC
1 AACTTTACTC
2278 AACTT
1 AACTT
2283 CCTGGAATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.40
Consensus pattern (10 bp):
AACTTTACTC
Found at i:5531 original size:15 final size:13
Alignment explanation
Indices: 5511--5545 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 13
5501 AGGAAAGATG
5511 AAGAAGAAAATAAGA
1 AAGAAGAAAAT--GA
5526 AAGAAGAAAATGA
1 AAGAAGAAAATGA
5539 AAGAAGA
1 AAGAAGA
5546 TAAAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 9 0.45
15 11 0.55
ACGTcount: A:0.71, C:0.00, G:0.23, T:0.06
Consensus pattern (13 bp):
AAGAAGAAAATGA
Found at i:21499 original size:22 final size:21
Alignment explanation
Indices: 21447--21499 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
21437 TCAGGAGTTA
** *
21447 CAGGAGTTATTTGATTTAATT
1 CAGGAGTTACATGATATAATT
*
21468 CTAGGGGTTACATGATATAATTT
1 C-AGGAGTTACATGATATAA-TT
21491 CAGGAGTTA
1 CAGGAGTTA
21500 TAACAGCTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 1 0.04
22 21 0.84
23 3 0.12
ACGTcount: A:0.30, C:0.08, G:0.23, T:0.40
Consensus pattern (21 bp):
CAGGAGTTACATGATATAATT
Found at i:27037 original size:6 final size:6
Alignment explanation
Indices: 27024--27063 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
27014 ACGGCTTGGC
* * *
27024 TCGTGG TTGTGG TTGTGG TCGTGG TCGTGG TCATGG TCGT
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGT
27064 TCTCGTGGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.03, C:0.12, G:0.45, T:0.40
Consensus pattern (6 bp):
TCGTGG
Found at i:27383 original size:22 final size:22
Alignment explanation
Indices: 27358--27399 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
27348 AAGAGTTATT
* *
27358 TGATTTAATTCCAGGGGTTACA
1 TGATATAATTCCAGGAGTTACA
*
27380 TGATATAATTTCAGGAGTTA
1 TGATATAATTCCAGGAGTTA
27400 TAACAGTTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (22 bp):
TGATATAATTCCAGGAGTTACA
Found at i:31841 original size:952 final size:952
Alignment explanation
Indices: 29992--33783 Score: 7296
Period size: 952 Copynumber: 4.0 Consensus size: 952
29982 GCATTTTTGT
*
29992 AATTGTCAGGGTTATATATCTTACGCTTGTATTATACATACATTCCTTGACATAGATATGAAAGT
1 AATTATCAGGGTTATATATCTTACGCTTGTATTATACATACATTCCTTGACATAGATATGAAAGT
30057 TTTTTTGTATGCATATTGCTCCTCACTTTCTTGTTCAAATGTTGTTTTGTGTCTACATCTTCAGC
66 TTTTTTGTATGCATATTGCTCCTCACTTTCTTGTTCAAATGTTGTTTTGTGTCTACATCTTCAGC
30122 AATATAATTATTCTAGCACCTAGTGTGTGATTTGTGCCCATGAAAACACTGATTAGGCTATAATT
131 AATATAATTATTCTAGCACCTAGTGTGTGATTTGTGCCCATGAAAACACTGATTAGGCTATAATT
*
30187 GTCAGGTCATTCATGATTAAAATCTGGAAATATAATTTCTTAGAAATGTCCTTCTATATTCTAAG
196 GTCAGGTCATTCATGATTAAAATCTGGAAATATAATTTCTTAGAAAGGTCCTTCTATATTCTAAG
*
30252 AGTAAGCAAATACAATGTGTTCATGGTTGAAGAATCAGCATAAATACTGCATGAAAAGCTGGGTG
261 AGTAAGCAAATACAATGTGTTCATGGTTGAAGAATCAACATAAATACTGCATGAAAAGCTGGGTG
30317 GATGCAATGAGTTCATGTCTAGGGTTTATAATATTCATTTGAATGAAAATTCAGTTCTTCATCAG
326 GATGCAATGAGTTCATGTCTAGGGTTTATAATATTCATTTGAATGAAAATTCAGTTCTTCATCAG
*
30382 TCAACAATTATATTCTTAATCTTCAACTCTGAATTAATTATTTTTCATAATAGACATCATTTTAA
391 TCAACAATTATATTCATAATCTTCAACTCTGAATTAATTATTTTTCATAATAGACATCATTTTAA
30447 ACAATGTAATATATGTTGTTATTAACCAATGTGTTTATTGGTTTTGACCTTATATTGTTTTGGAT
456 ACAATGTAATATATGTTGTTATTAACCAATGTGTTTATTGGTTTTGACCTTATATTGTTTTGGAT
*
30512 TGCAGTTGATTGCTGTTATTCTGGGTCATCTTTGGTGCGCACAGTAAGTTTTTTTACCTTTTTCT
521 TGCAGTTGATTGCTGTTATTCTGGGTCATCTTTGGTGCGCACAGTAAGTTTTCTTACCTTTTTCT
30577 TGTGCGTTTCTATTTAATAGTTGCTTGGTTTGTAGTATTTGCTCTTTTTAAACTTTGTTAAACCA
586 TGTGCGTTTCTATTTAATAGTTGCTTGGTTTGTAGTATTTGCTCTTTTTAAACTTTGTTAAACCA
*
30642 AGTTTATTGAATACTATGCAGACACCCTCAAATGAAGGCAATAATTGAATTACTACTTAAGCAGC
651 AGTTTATTGAATACTATGCAGACACCCTCAAATGAAGGCAAGAATTGAATTACTACTTAAGCAGC
30707 AGAAGCTTACTAAAAAAGATGTCAAGGATATACTTCAGGTATTTTCCCCCTTAAAAACTATATTC
716 AGAAGCTTACTAAAAAAGATGTCAAGGATATACTTCAGGTATTTTCCCCCTTAAAAACTATATTC
30772 AAGTTGTAAAATTTGTAGGAAAAATATTAGTTACATGTCAGCTTGTTGATAAACAAAATCGTTAA
781 AAGTTGTAAAATTTGTAGGAAAAATATTAGTTACATGTCAGCTTGTTGATAAACAAAATCGTTAA
*
30837 GTCTTTGCTTGGTGTGAAGAATAGAAAATTGTTAATCAAATGGTTCATAACTACTTTCTTCCTTT
846 GGCTTTGCTTGGTGTGAAGAATAGAAAATTGTTAATCAAATGGTTCATAACTACTTTCTTCCTTT
30902 GCAACTTAGCAATTAGATTAACAAATTGTTAATCAAATGTTG
911 GCAACTTAGCAATTAGATTAACAAATTGTTAATCAAATGTTG
30944 AATTATCAGGGTTATATATCTTACGCTTGTATTATACATACATTCCTTGACATAGATATGAAAGT
1 AATTATCAGGGTTATATATCTTACGCTTGTATTATACATACATTCCTTGACATAGATATGAAAGT
31009 TTTTTTGTATGCATATTGCTCCTCACTTTCTTGTTCAAATGTTGTTTTGTGTCTACATCTTCAGC
66 TTTTTTGTATGCATATTGCTCCTCACTTTCTTGTTCAAATGTTGTTTTGTGTCTACATCTTCAGC
*
31074 AATATAATTATTCTAGCACCTAGTGTGTGATTTATGCCCATGAAAACACTGATTAGGCTATAATT
131 AATATAATTATTCTAGCACCTAGTGTGTGATTTGTGCCCATGAAAACACTGATTAGGCTATAATT
*
31139 GTCAGGTCATTCATGATTAAAATCTGGAAATATAATTTCTTAGAAATGTCCTTCTATATTCTAAG
196 GTCAGGTCATTCATGATTAAAATCTGGAAATATAATTTCTTAGAAAGGTCCTTCTATATTCTAAG
*
31204 AGTAAGCAAATACAATGTGTTCATGGTTGAAGAATCAGCATAAATACTGCATGAAAAGCTGGGTG
261 AGTAAGCAAATACAATGTGTTCATGGTTGAAGAATCAACATAAATACTGCATGAAAAGCTGGGTG
31269 GATGCAATGAGTTCATGTCTAGGGTTTATAATATTCATTTGAATGAAAATTCAGTTCTTCATCAG
326 GATGCAATGAGTTCATGTCTAGGGTTTATAATATTCATTTGAATGAAAATTCAGTTCTTCATCAG
*
31334 TCAACAATTATATTCTTAATCTTCAACTCTGAATTAATTATTTTTCATAATAGACATCATTTTAA
391 TCAACAATTATATTCATAATCTTCAACTCTGAATTAATTATTTTTCATAATAGACATCATTTTAA
31399 ACAATGTAATATATGTTGTTATTAACCAATGTGTTTATTGGTTTTGACCTTATATTGTTTTGGAT
456 ACAATGTAATATATGTTGTTATTAACCAATGTGTTTATTGGTTTTGACCTTATATTGTTTTGGAT
*
31464 TGCAGTTGATTGCTGTTATTCTGGGTCATCTTTGGTGCGCACATTAAGTTTTCTTACCTTTTTCT
521 TGCAGTTGATTGCTGTTATTCTGGGTCATCTTTGGTGCGCACAGTAAGTTTTCTTACCTTTTTCT
* *
31529 TGTTCGTTTCTATTTAATAGTTGCTTGGTTTGTAGTCTTTGCTCTTTTTAAACTTTGTTAAACCA
586 TGTGCGTTTCTATTTAATAGTTGCTTGGTTTGTAGTATTTGCTCTTTTTAAACTTTGTTAAACCA
*
31594 AGTTTATTGAATACTATGCAGACACCCTCAAATGAAGGCAATAATTGAATTACTACTTAAGCAGC
651 AGTTTATTGAATACTATGCAGACACCCTCAAATGAAGGCAAGAATTGAATTACTACTTAAGCAGC
31659 AGAAGCTTACTAAAAAAGATGTCAAGGATATACTTCAGGTATTTTCCCCCTTAAAAACTATATTC
716 AGAAGCTTACTAAAAAAGATGTCAAGGATATACTTCAGGTATTTTCCCCCTTAAAAACTATATTC
31724 AAGTTGTAAAATTTGTAGGAAAAATATTAGTTACATGTCAGCTTGTTGATAAACAAAATCGTTAA
781 AAGTTGTAAAATTTGTAGGAAAAATATTAGTTACATGTCAGCTTGTTGATAAACAAAATCGTTAA
31789 GGCTTTGCTTGGTGTGAAGAATAGAAAATTGTTAATCAAATGGTTCATAACTACTTTCTTCCTTT
846 GGCTTTGCTTGGTGTGAAGAATAGAAAATTGTTAATCAAATGGTTCATAACTACTTTCTTCCTTT
31854 GCAACTTAGCAATTAGATTAACAAATTGTTAATCAAATGTTG
911 GCAACTTAGCAATTAGATTAACAAATTGTTAATCAAATGTTG
*
31896 AATTATCAGGTTTATATATCTTACGCTTGTATTATACATACATTCCTTGACATAGATATGAAAGT
1 AATTATCAGGGTTATATATCTTACGCTTGTATTATACATACATTCCTTGACATAGATATGAAAGT
31961 TTTTTTGTATGCATATTGCTCCTCACTTTCTTGTTCAAATGTTGTTTTGTGTCTACATCTTCAGC
66 TTTTTTGTATGCATATTGCTCCTCACTTTCTTGTTCAAATGTTGTTTTGTGTCTACATCTTCAGC
32026 AATATAATTATTCTAGCACCTAGTGTGTGATTTGTGCCCATGAAAACACTGATTAGGCTATAATT
131 AATATAATTATTCTAGCACCTAGTGTGTGATTTGTGCCCATGAAAACACTGATTAGGCTATAATT
*
32091 GTCAGGTCATTCATGATTAAAATCTGGAAATATAATTTCTTGGAAAGGTCCTTCTATATTCTAAG
196 GTCAGGTCATTCATGATTAAAATCTGGAAATATAATTTCTTAGAAAGGTCCTTCTATATTCTAAG
32156 AGTAAGCAAATACAATGTGTTCATGGTTGAAGAATCAACATAAATACTGCATGAAAAGCTGGGTG
261 AGTAAGCAAATACAATGTGTTCATGGTTGAAGAATCAACATAAATACTGCATGAAAAGCTGGGTG
32221 GATGCAATGAGTTCATGTCTAGGGTTTATAATATTCATTTGAATGAAAATTCAGTTCTTCATCAG
326 GATGCAATGAGTTCATGTCTAGGGTTTATAATATTCATTTGAATGAAAATTCAGTTCTTCATCAG
32286 TCAACAATTATATTCATAATCTTCAACTCTGAATTAATTATTTTTCATAATAGACATCATTTTAA
391 TCAACAATTATATTCATAATCTTCAACTCTGAATTAATTATTTTTCATAATAGACATCATTTTAA
32351 ACAATGTAATATATGTTGTTATTAACCAATGTGTTTATTGGTTTTGACCTTATATTGTTTTGGAT
456 ACAATGTAATATATGTTGTTATTAACCAATGTGTTTATTGGTTTTGACCTTATATTGTTTTGGAT
*
32416 TGCAGTTGATTGCTGTTATTCTGGGTCATCTTTGGTGCGCACAGTAAGTTTTTTTACCTTTTTCT
521 TGCAGTTGATTGCTGTTATTCTGGGTCATCTTTGGTGCGCACAGTAAGTTTTCTTACCTTTTTCT
32481 TGTGCGTTTCTATTTAATAGTTGCTTGGTTTGTAGTATTTGCTCTTTTTAAACTTTGTTAAACCA
586 TGTGCGTTTCTATTTAATAGTTGCTTGGTTTGTAGTATTTGCTCTTTTTAAACTTTGTTAAACCA
*
32546 AGTTTATTGAATACTATGCAGACACCCTCAAATGAAGGCAAGAATTGAATTACTACTTGAGCAGC
651 AGTTTATTGAATACTATGCAGACACCCTCAAATGAAGGCAAGAATTGAATTACTACTTAAGCAGC
32611 AGAAGCTTACTAAAAAAGATGTCAAGGATATACTTCAGGTATTTTCCCCCTTAAAAACTATATTC
716 AGAAGCTTACTAAAAAAGATGTCAAGGATATACTTCAGGTATTTTCCCCCTTAAAAACTATATTC
32676 AAGTTGTAAAATTTGTAGGAAAAATATTAGTTACATGTCAGCTTGTTGATAAACAAAATCGTTAA
781 AAGTTGTAAAATTTGTAGGAAAAATATTAGTTACATGTCAGCTTGTTGATAAACAAAATCGTTAA
*
32741 GGCTTTGCTTTGTGTGAAGAATAGAAAATTGTTAATCAAATGGTTCATAACTACTTTCTTCCTTT
846 GGCTTTGCTTGGTGTGAAGAATAGAAAATTGTTAATCAAATGGTTCATAACTACTTTCTTCCTTT
32806 GCAACTTAGCAATTAGATTAACAAATTGTTAATCAAATGTTG
911 GCAACTTAGCAATTAGATTAACAAATTGTTAATCAAATGTTG
32848 AATTATCAGGGTTATATATCTTACGCTTGTATTATACATACATTCCTTGACATAGATATGAAAGT
1 AATTATCAGGGTTATATATCTTACGCTTGTATTATACATACATTCCTTGACATAGATATGAAAGT
32913 TTTTTTGTATGCATATTGCTCCTCACTTTCTTGTTCAAATGTTGTTTTGTGTCTACATCTTCAGC
66 TTTTTTGTATGCATATTGCTCCTCACTTTCTTGTTCAAATGTTGTTTTGTGTCTACATCTTCAGC
*
32978 AATATAATTATTCTAGCACCTAGTGTGTGATTTGTGCCCATGACAACACTGATTAGGCTATAATT
131 AATATAATTATTCTAGCACCTAGTGTGTGATTTGTGCCCATGAAAACACTGATTAGGCTATAATT
*
33043 GTCAGGTCATTCATGATTAAAATCTGGAAATATAATTTCTTGGAAAGGTCCTTCTATATTCTAAG
196 GTCAGGTCATTCATGATTAAAATCTGGAAATATAATTTCTTAGAAAGGTCCTTCTATATTCTAAG
33108 AGTAAGCAAATACAATGTGTTCATGGTTGAAGAATCAACATAAATACTGCATGAAAAGCTGGGTG
261 AGTAAGCAAATACAATGTGTTCATGGTTGAAGAATCAACATAAATACTGCATGAAAAGCTGGGTG
33173 GATGCAATGAGTTCATGTCTAGGGTTTATAATATTCATTTGAATGAAAATTCAGTTCTTCATCAG
326 GATGCAATGAGTTCATGTCTAGGGTTTATAATATTCATTTGAATGAAAATTCAGTTCTTCATCAG
33238 TCAACAATTATATTCATAATCTTCAACTCTGAATTAATTATTTTTCATAATAGACATCATTTTAA
391 TCAACAATTATATTCATAATCTTCAACTCTGAATTAATTATTTTTCATAATAGACATCATTTTAA
33303 ACAATGTAATATATGTTGTTATTAACCAATGTGTTTATTGGTTTTGACCTTATATTGTTTTGGAT
456 ACAATGTAATATATGTTGTTATTAACCAATGTGTTTATTGGTTTTGACCTTATATTGTTTTGGAT
* *
33368 TGCAGTTGATTGCTGTTATTCTGGGTCATCTTTGGTGCTCACAGTAAGTTTTCTCACCTTTTTCT
521 TGCAGTTGATTGCTGTTATTCTGGGTCATCTTTGGTGCGCACAGTAAGTTTTCTTACCTTTTTCT
* * * *
33433 TGTTCATTTTTATTTAATAGTTGCTTGGTTTGTAGTCTTTGCTCTTTTTAAACTTTGTTAAACCA
586 TGTGCGTTTCTATTTAATAGTTGCTTGGTTTGTAGTATTTGCTCTTTTTAAACTTTGTTAAACCA
*
33498 AGTTTATTGAATACTATGCAGACACCCTCAAATGAAGGCAAGAATTGAATTACTACTTGAGCAGC
651 AGTTTATTGAATACTATGCAGACACCCTCAAATGAAGGCAAGAATTGAATTACTACTTAAGCAGC
33563 AGAAGCTTACTAAAAAAGATGTCAAGGATATACTTCAGGTATTTTCCCCCTTAAAAACTATATTC
716 AGAAGCTTACTAAAAAAGATGTCAAGGATATACTTCAGGTATTTTCCCCCTTAAAAACTATATTC
* *
33628 AAGTTGTAAAATTTGTAGGAAAAAAATTAGTTACATGCCAGCTTGTTGATAAACAAAATCGTTAA
781 AAGTTGTAAAATTTGTAGGAAAAATATTAGTTACATGTCAGCTTGTTGATAAACAAAATCGTTAA
*
33693 GGCTTTGCTTGGTGTGAAGAATAGAAAATTGTTGATCAAATGGTTCATAACTACTTTCTTCCTTT
846 GGCTTTGCTTGGTGTGAAGAATAGAAAATTGTTAATCAAATGGTTCATAACTACTTTCTTCCTTT
33758 GCAACTTAGCAATTAGATTAACAAAT
911 GCAACTTAGCAATTAGATTAACAAAT
33784 GAATTCTTGT
Statistics
Matches: 2807, Mismatches: 33, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
952 2807 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (952 bp):
AATTATCAGGGTTATATATCTTACGCTTGTATTATACATACATTCCTTGACATAGATATGAAAGT
TTTTTTGTATGCATATTGCTCCTCACTTTCTTGTTCAAATGTTGTTTTGTGTCTACATCTTCAGC
AATATAATTATTCTAGCACCTAGTGTGTGATTTGTGCCCATGAAAACACTGATTAGGCTATAATT
GTCAGGTCATTCATGATTAAAATCTGGAAATATAATTTCTTAGAAAGGTCCTTCTATATTCTAAG
AGTAAGCAAATACAATGTGTTCATGGTTGAAGAATCAACATAAATACTGCATGAAAAGCTGGGTG
GATGCAATGAGTTCATGTCTAGGGTTTATAATATTCATTTGAATGAAAATTCAGTTCTTCATCAG
TCAACAATTATATTCATAATCTTCAACTCTGAATTAATTATTTTTCATAATAGACATCATTTTAA
ACAATGTAATATATGTTGTTATTAACCAATGTGTTTATTGGTTTTGACCTTATATTGTTTTGGAT
TGCAGTTGATTGCTGTTATTCTGGGTCATCTTTGGTGCGCACAGTAAGTTTTCTTACCTTTTTCT
TGTGCGTTTCTATTTAATAGTTGCTTGGTTTGTAGTATTTGCTCTTTTTAAACTTTGTTAAACCA
AGTTTATTGAATACTATGCAGACACCCTCAAATGAAGGCAAGAATTGAATTACTACTTAAGCAGC
AGAAGCTTACTAAAAAAGATGTCAAGGATATACTTCAGGTATTTTCCCCCTTAAAAACTATATTC
AAGTTGTAAAATTTGTAGGAAAAATATTAGTTACATGTCAGCTTGTTGATAAACAAAATCGTTAA
GGCTTTGCTTGGTGTGAAGAATAGAAAATTGTTAATCAAATGGTTCATAACTACTTTCTTCCTTT
GCAACTTAGCAATTAGATTAACAAATTGTTAATCAAATGTTG
Found at i:42752 original size:204 final size:204
Alignment explanation
Indices: 42399--43207 Score: 1275
Period size: 204 Copynumber: 4.0 Consensus size: 204
42389 TAACGAATAA
*
42399 AAATGAAGATATTCATGAACAGGCCAAGCCATTTTCAGATTCCATACAACAGAAAACAA-GCATT
1 AAATGAAGATATTCATGAACAGGCCAAGCCATTTTCAGATTCCATACAACTGAAAACAAGGC-TT
* *
42463 GAGGCAAGATGCTGTGATTCACCAAAAATTGCAAAGCCAAGGACACCCTTGAAGGGTAAATCGAA
65 GAAGCAAGATGCTGTGAATCACCAAAAATTGCAAAGCCAAGGACACCCTTGAAGGGTAAATCGAA
* * *
42528 GAATGAGGTGT-CTATAAAGCAAGGATCCAACAGCCAACAACATCCCTTCCTTGGCTCACGAGAA
130 GAATGAGGTGTAC-ATAAAGCAAGGGTCCAACAGCCAACAACATCTCTTCCTTGGCTCACAAGAA
**
42592 ACTGTAACAAG
194 ACTGTAACTCG
* *
42603 AAATGAAGGTAGTCATGAACAGGCCAAGCCATTTTCAGATTCCATACAACTGAAAACAAGGCTTG
1 AAATGAAGATATTCATGAACAGGCCAAGCCATTTTCAGATTCCATACAACTGAAAACAAGGCTTG
*
42668 AAGCAAGATGCTGTGAATCACCAAAAATTGCAAAGCCAAGGACACCCTTGAAGGGTAAATCAAAG
66 AAGCAAGATGCTGTGAATCACCAAAAATTGCAAAGCCAAGGACACCCTTGAAGGGTAAATCGAAG
* * *
42733 AATGAGGTGTACGTAAAGCAAGGGTCCAACAGCCAGCAACATCTTTTCCTTGGCTCACAAGAAAC
131 AATGAGGTGTACATAAAGCAAGGGTCCAACAGCCAACAACATCTCTTCCTTGGCTCACAAGAAAC
42798 TGTAACTCG
196 TGTAACTCG
* * *
42807 AAATGAAGATATTCGTGAACAGGGCAAGCCATTTTCAGATTCCATACAACTGAAAACATGGCTTG
1 AAATGAAGATATTCATGAACAGGCCAAGCCATTTTCAGATTCCATACAACTGAAAACAAGGCTTG
*
42872 AAGCAAGATGCTGTGAATCACCAAAAATTGCAAAGCCAAGGACACCCTTGAAGGGTAAATTGAAG
66 AAGCAAGATGCTGTGAATCACCAAAAATTGCAAAGCCAAGGACACCCTTGAAGGGTAAATCGAAG
* * * **
42937 AATGAGATGTCCATAAAGCAAGGGTTCAACAATCAACAACATCTCTTCCTTGGCTCACAAGAAAC
131 AATGAGGTGTACATAAAGCAAGGGTCCAACAGCCAACAACATCTCTTCCTTGGCTCACAAGAAAC
43002 TGTAACTCG
196 TGTAACTCG
*
43011 AAATGAAGATATTCATGAACAGGCCAAGTCATTTTCAGATTCCATACAACAT-AAAACAAGGCTT
1 AAATGAAGATATTCATGAACAGGCCAAGCCATTTTCAGATTCCATACAAC-TGAAAACAAGGCTT
* * * * *
43075 GAAGCAAGATGCTCTGAATCACCAAAAATTGCAAAGCCAAGGACACCCTTGAAGCGTCAATTGGA
65 GAAGCAAGATGCTGTGAATCACCAAAAATTGCAAAGCCAAGGACACCCTTGAAGGGTAAATCGAA
* *
43140 GAATGAGGTG-ACCATAAGGCAAGGGTCCAACAGCCAAGAACATCTCTTCCTTGGCTCACAAGAA
130 GAATGAGGTGTA-CATAAAGCAAGGGTCCAACAGCCAACAACATCTCTTCCTTGGCTCACAAGAA
43204 ACTG
194 ACTG
43208 CAGAAACTGC
Statistics
Matches: 557, Mismatches: 44, Indels: 8
0.91 0.07 0.01
Matches are distributed among these distances:
204 553 0.99
205 4 0.01
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (204 bp):
AAATGAAGATATTCATGAACAGGCCAAGCCATTTTCAGATTCCATACAACTGAAAACAAGGCTTG
AAGCAAGATGCTGTGAATCACCAAAAATTGCAAAGCCAAGGACACCCTTGAAGGGTAAATCGAAG
AATGAGGTGTACATAAAGCAAGGGTCCAACAGCCAACAACATCTCTTCCTTGGCTCACAAGAAAC
TGTAACTCG
Found at i:43600 original size:78 final size:78
Alignment explanation
Indices: 43321--43639 Score: 347
Period size: 78 Copynumber: 4.1 Consensus size: 78
43311 GAATTTTAGC
* * * * * *
43321 GTAGAGAACGAGATAGGTGAAGAAGAGGGCAATTATCATCATCAACATCTCAAGCTACAGTCTCA
1 GTAGAGAATGAGATTGGTGAAGAAGAGGGCAATGATCATCATCAGCATCTCGAGCTAGAGTCTCA
43386 GTCTCAGGATACT
66 GTCTCAGGATACT
*** * * * *
43399 GTAGAGAATGAGAACAGTGAAGAAGA-GTCGAATGGTCATCATCAGCAT-TCGGGCCAGAGTCTC
1 GTAGAGAATGAGATTGGTGAAGAAGAGGGC-AATGATCATCATCAGCATCTCGAGCTAGAGTCTC
*
43462 AGTCTCAGGATACC
65 AGTCTCAGGATACT
** * * * *
43476 GTAGAGAATGAGATTGGTGAAGAAGAGGGGGATGGTCATCATCAGCATCTCGGGCTAGATTTTCA
1 GTAGAGAATGAGATTGGTGAAGAAGAGGGCAATGATCATCATCAGCATCTCGAGCTAGAGTCTCA
43541 GTCTCAGGATACT
66 GTCTCAGGATACT
* * * * *
43554 GTAGAGAATGAGATTGGTGAAGAAGAGGGCAATGATAAT-AGGCAGCATCCCGAGTTAGACTCTC
1 GTAGAGAATGAGATTGGTGAAGAAGAGGGCAATGATCATCA-TCAGCATCTCGAGCTAGAGTCTC
* *
43618 AATCTCAGGATGCT
65 AGTCTCAGGATACT
*
43632 TTAGAGAA
1 GTAGAGAA
43640 GTCAACAACA
Statistics
Matches: 201, Mismatches: 36, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
77 67 0.33
78 134 0.67
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (78 bp):
GTAGAGAATGAGATTGGTGAAGAAGAGGGCAATGATCATCATCAGCATCTCGAGCTAGAGTCTCA
GTCTCAGGATACT
Found at i:44401 original size:3 final size:3
Alignment explanation
Indices: 44393--44428 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
44383 TGATCAGGGT
44393 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
44429 AGGAGCTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:44497 original size:144 final size:144
Alignment explanation
Indices: 44276--44553 Score: 511
Period size: 144 Copynumber: 1.9 Consensus size: 144
44266 CGACAACGAC
44276 GAAGAAGAAAGGAGCTTAAGCAGCCATGAATGTCAGCAAGAGGTTGAGGGTAAGGAAGAAACCAT
1 GAAGAAGAAAGGAGCTTAAGCAGCCATGAATGTCAGCAAGAGGTTGAGGGTAAGGAAGAAACCAT
* * *
44341 CCAACCAATGTGTTGCCTGCAGACAAATTTGCATTCAGAAGGTGATCAGGGTGAAGAAGAAGAAG
66 CCAACCAATGTGTTGCCAGCAGACAAATTTGCATCCAGAAGGTGATCAGGGTGAAGAAGAACAAG
44406 AAGAAGAAGAAGAA
131 AAGAAGAAGAAGAA
*
44420 GAAGAAGAAAGGAGCTTAAGCAGCCATGAATGTCAGCAAGAGGTTGAGGGTAAGGAAGAAACCCT
1 GAAGAAGAAAGGAGCTTAAGCAGCCATGAATGTCAGCAAGAGGTTGAGGGTAAGGAAGAAACCAT
*
44485 CCAACCAATGTGTTGCCAGCAGACAAATTTGCATCCAGAAGGTGATCAGGGTGCAGAAGAACAAG
66 CCAACCAATGTGTTGCCAGCAGACAAATTTGCATCCAGAAGGTGATCAGGGTGAAGAAGAACAAG
44550 AAGA
131 AAGA
44554 TGACGGTGAC
Statistics
Matches: 129, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 129 1.00
ACGTcount: A:0.40, C:0.15, G:0.29, T:0.15
Consensus pattern (144 bp):
GAAGAAGAAAGGAGCTTAAGCAGCCATGAATGTCAGCAAGAGGTTGAGGGTAAGGAAGAAACCAT
CCAACCAATGTGTTGCCAGCAGACAAATTTGCATCCAGAAGGTGATCAGGGTGAAGAAGAACAAG
AAGAAGAAGAAGAA
Found at i:47104 original size:42 final size:42
Alignment explanation
Indices: 47002--47373 Score: 354
Period size: 42 Copynumber: 8.7 Consensus size: 42
46992 ATAGGTCAAA
*
47002 ATCTATAGCGGCGTTTTTCGAAACAAACGCCGCAATAA-GTCGAG
1 ATCTATAGCGGCGTTTTT-GGAACAAACGCCGCAA-AAGGTC-AG
* *
47046 CTCTATAGCGGTGTTTTTGGAGA-AAACGCCGCAAAAGGTCAG
1 ATCTATAGCGGCGTTTTTGGA-ACAAACGCCGCAAAAGGTCAG
* * *
47088 ATCTATAGAGGCGTTTTTGGAACAAACGCCGCAATAGGTTGAG
1 ATCTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGG-TCAG
** * * *
47131 ATCTATAGCGGCGTTTTTATAGA-AAATGCCGCAAAATGTCGG
1 ATCTATAGCGGCGTTTTTGGA-ACAAACGCCGCAAAAGGTCAG
* *** * *
47173 ATCTATAGCGACGTTTTTGGAACAAACATTGTAGAAGGTCGAG
1 ATCTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTC-AG
* * *
47216 ATATATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGATTAG
1 ATCTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCAG
* *
47258 ATCTATAGCGGCGTTTTTGGAACAAACGCTGCAGAAGGTCGAG
1 ATCTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTC-AG
* * * * * * * **
47301 ATATATAACGACGTTTTTGGAATAAATGCTGTAAAATTTCAG
1 ATCTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCAG
*
47343 ATCTATAGCGGCGTTTTTGGATGCAAACGCC
1 ATCTATAGCGGCGTTTTTGGA-ACAAACGCC
47374 ACTAATTATT
Statistics
Matches: 262, Mismatches: 57, Indels: 19
0.78 0.17 0.06
Matches are distributed among these distances:
41 2 0.01
42 123 0.47
43 119 0.45
44 18 0.07
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (42 bp):
ATCTATAGCGGCGTTTTTGGAACAAACGCCGCAAAAGGTCAG
Found at i:47136 original size:85 final size:85
Alignment explanation
Indices: 47002--47373 Score: 392
Period size: 85 Copynumber: 4.4 Consensus size: 85
46992 ATAGGTCAAA
* * * * *
47002 ATCTATAGCGGCGTTTTTCGAAACAAACGCCGCA-ATAAGTCGAGCTCTATAGCGGTGTTTTTGG
1 ATCTATAGCGGCGTTTTT-GGAACAAACGCCGCAGA-AGGTCGAGATATATAGCGGCGTTTTTGG
47066 AGA-AAACGCCGCAAAAGGTCAG
64 A-ACAAACGCCGCAAAAGGTCAG
* * * **
47088 ATCTATAGAGGCGTTTTTGGAACAAACGCCGCA-ATAGGTTGAGATCTATAGCGGCGTTTTTATA
1 ATCTATAGCGGCGTTTTTGGAACAAACGCCGCAGA-AGGTCGAGATATATAGCGGCGTTTTTGGA
* * *
47152 GA-AAATGCCGCAAAATGTCGG
65 -ACAAACGCCGCAAAAGGTCAG
* *** *
47173 ATCTATAGCGACGTTTTTGGAACAAACATTGTAGAAGGTCGAGATATATAGCGGCGTTTTTGGAA
1 ATCTATAGCGGCGTTTTTGGAACAAACGCCGCAGAAGGTCGAGATATATAGCGGCGTTTTTGGAA
* *
47238 CAAACGCCGCAAAAGATTAG
66 CAAACGCCGCAAAAGGTCAG
* * *
47258 ATCTATAGCGGCGTTTTTGGAACAAACGCTGCAGAAGGTCGAGATATATAACGACGTTTTTGGAA
1 ATCTATAGCGGCGTTTTTGGAACAAACGCCGCAGAAGGTCGAGATATATAGCGGCGTTTTTGGAA
* * * * **
47323 TAAATGCTGTAAAATTTCAG
66 CAAACGCCGCAAAAGGTCAG
*
47343 ATCTATAGCGGCGTTTTTGGATGCAAACGCC
1 ATCTATAGCGGCGTTTTTGGA-ACAAACGCC
47374 ACTAATTATT
Statistics
Matches: 242, Mismatches: 41, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
84 1 0.00
85 216 0.89
86 25 0.10
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (85 bp):
ATCTATAGCGGCGTTTTTGGAACAAACGCCGCAGAAGGTCGAGATATATAGCGGCGTTTTTGGAA
CAAACGCCGCAAAAGGTCAG
Found at i:47248 original size:170 final size:170
Alignment explanation
Indices: 47040--47363 Score: 438
Period size: 170 Copynumber: 1.9 Consensus size: 170
47030 GCCGCAATAA
* * * *
47040 GTCGAGCTCTATAGCGGTGTTTTTGGAGAAAACGCCGCAAAAGGTCAGATCTATAGAGGCGTTTT
1 GTCGAGATATATAGCGGCGTTTTTGGAGAAAACGCCGCAAAAGATCAGATCTATAGAGGCGTTTT
* * * * *
47105 TGGAACAAACGCCGCA-ATAGGTTGAGATCTATAGCGGCGTTTTTATAGA-AAATGCCGCAAAAT
66 TGGAACAAACGCCGCAGA-AGGTCGAGATATATAACGACGTTTTTAGA-ATAAATGCCGCAAAAT
*
47168 GTCGGATCTATAGCGACGTTTTTGGAACAAACATTGTAGAAG
129 GTCAGATCTATAGCGACGTTTTTGGAACAAACATTGTAGAAG
* *
47210 GTCGAGATATATAGCGGCGTTTTTGGA-ACAAACGCCGCAAAAGATTAGATCTATAGCGGCGTTT
1 GTCGAGATATATAGCGGCGTTTTTGGAGA-AAACGCCGCAAAAGATCAGATCTATAGAGGCGTTT
* * * * *
47274 TTGGAACAAACGCTGCAGAAGGTCGAGATATATAACGACGTTTTTGGAATAAATGCTGTAAAATT
65 TTGGAACAAACGCCGCAGAAGGTCGAGATATATAACGACGTTTTTAGAATAAATGCCGCAAAATG
*
47339 TCAGATCTATAGCGGCGTTTTTGGA
130 TCAGATCTATAGCGACGTTTTTGGA
47364 TGCAAACGCC
Statistics
Matches: 133, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
169 2 0.02
170 130 0.98
171 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (170 bp):
GTCGAGATATATAGCGGCGTTTTTGGAGAAAACGCCGCAAAAGATCAGATCTATAGAGGCGTTTT
TGGAACAAACGCCGCAGAAGGTCGAGATATATAACGACGTTTTTAGAATAAATGCCGCAAAATGT
CAGATCTATAGCGACGTTTTTGGAACAAACATTGTAGAAG
Found at i:51130 original size:40 final size:41
Alignment explanation
Indices: 51001--51168 Score: 143
Period size: 40 Copynumber: 4.2 Consensus size: 41
50991 TTTTAAACAC
* * *
51001 AAACGCCACTAAAGTACGA-GTCTATAGCGGTGTTTGTATAA
1 AAACGCCGCTAAAGTA-TATGTCTATAGCGGCGTTTGTATAA
** * * *
51042 AAATACCGCTAAAGATCTAT-T-TATAGCGGCATTTGAATAA
1 AAACGCCGCTAAAG-TATATGTCTATAGCGGCGTTTGTATAA
*
51082 AAATGCCGCTAAAGTATATGTCTATAGCGGCGTTTGTAT-A
1 AAACGCCGCTAAAGTATATGTCTATAGCGGCGTTTGTATAA
* * *
51122 GAACGCCGCTAAAGTACTACT-T-T-TTGTGGCGTTTGTATAA
1 AAACGCCGCTAAAGTA-TA-TGTCTATAGCGGCGTTTGTATAA
51162 AAACGCC
1 AAACGCC
51169 AAAGTACTAT
Statistics
Matches: 103, Mismatches: 17, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
39 17 0.17
40 53 0.51
41 31 0.30
42 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (41 bp):
AAACGCCGCTAAAGTATATGTCTATAGCGGCGTTTGTATAA
Found at i:51542 original size:2 final size:2
Alignment explanation
Indices: 51535--51602 Score: 104
Period size: 2 Copynumber: 35.0 Consensus size: 2
51525 TGATTTCTAT
*
51535 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
51577 TA TG TA TA TA TA TA -A TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51603 GTTTTGAAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
1 2 0.03
2 58 0.97
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:51615 original size:22 final size:22
Alignment explanation
Indices: 51590--51672 Score: 112
Period size: 23 Copynumber: 3.6 Consensus size: 22
51580 GTATATATAT
51590 AATATATAATATAGTTTTGAAA
1 AATATATAATATAGTTTTGAAA
51612 AATATATAATATAGTTTCTGAAA
1 AATATATAATATAGTTT-TGAAA
* *
51635 AACATATTATATAGGTTTTGAAAA
1 AATATATAATATA-GTTTTG-AAA
51659 AATATATAAATATA
1 AATATAT-AATATA
51673 TAAAGTTTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
22 17 0.32
23 18 0.34
24 13 0.25
25 5 0.09
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.39
Consensus pattern (22 bp):
AATATATAATATAGTTTTGAAA
Found at i:51616 original size:27 final size:26
Alignment explanation
Indices: 51588--51714 Score: 74
Period size: 22 Copynumber: 5.0 Consensus size: 26
51578 ATGTATATAT
51588 ATAATATATAATATAGTTTTG---AA
1 ATAATATATAATATAGTTTTGAAAAA
51611 A-AATATATAATATAGTTTCTGAAAAA
1 ATAATATATAATATAGTTT-TGAAAAA
*
51637 CAT-AT-TAT-ATA-GGTTTTGAAAAA
1 -ATAATATATAATATAGTTTTGAAAAA
* *
51660 ATATATAAATATATAAAGTTTTTGAAAACA
1 ATA-ATATATA-ATATAG-TTTTGAAAA-A
* **
51690 TATAATGTAT-ATATTTTTTTGAAAA
1 -ATAATATATAATATAGTTTTGAAAA
51715 CATAGTTTTT
Statistics
Matches: 81, Mismatches: 8, Indels: 26
0.70 0.07 0.23
Matches are distributed among these distances:
22 19 0.23
23 10 0.12
24 6 0.07
25 5 0.06
26 5 0.06
27 15 0.19
28 4 0.05
29 9 0.11
30 5 0.06
31 3 0.04
ACGTcount: A:0.48, C:0.02, G:0.09, T:0.41
Consensus pattern (26 bp):
ATAATATATAATATAGTTTTGAAAAA
Found at i:51700 original size:28 final size:28
Alignment explanation
Indices: 51584--51718 Score: 78
Period size: 23 Copynumber: 5.1 Consensus size: 28
51574 GTATATGTAT
51584 ATATATAATATATAATATAG-TTTTGAAAA-
1 ATATATAA-ATAT-ATA-AGTTTTTGAAAAC
*
51613 ATATAT--A-ATAT-AGTTTCTGAAAA-
1 ATATATAAATATATAAGTTTTTGAAAAC
* * *
51636 ACATAT---TATAT-AGGTTTTGAAAAA
1 ATATATAAATATATAAGTTTTTGAAAAC
51660 ATATATAAATATATAAAGTTTTTGAAAAC
1 ATATATAAATATAT-AAGTTTTTGAAAAC
** **
51689 ATATA-ATGTATATATTTTTTTGAAAAC
1 ATATATAAATATATAAGTTTTTGAAAAC
51716 ATA
1 ATA
51719 GTTTTTGAAA
Statistics
Matches: 87, Mismatches: 11, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
22 2 0.02
23 27 0.31
24 7 0.08
25 2 0.02
26 1 0.01
27 20 0.23
28 6 0.07
29 22 0.25
ACGTcount: A:0.48, C:0.03, G:0.08, T:0.41
Consensus pattern (28 bp):
ATATATAAATATATAAGTTTTTGAAAAC
Found at i:51740 original size:16 final size:17
Alignment explanation
Indices: 51716--51753 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
51706 TTTTGAAAAC
51716 ATAGTTTTTGAAAATAT
1 ATAGTTTTTGAAAATAT
*
51733 ATAGTTTTTTAAATATAT
1 ATAGTTTTTGAAA-ATAT
51751 ATA
1 ATA
51754 TATATATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (17 bp):
ATAGTTTTTGAAAATAT
Found at i:51741 original size:18 final size:18
Alignment explanation
Indices: 51697--51753 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
51687 ACATATAATG
*
51697 TATATATTTTTTTG-AAA
1 TATATAGTTTTTTGAAAA
*
51714 -ACATAG-TTTTTGAAAA
1 TATATAGTTTTTTGAAAA
51730 TATATAGTTTTTT-AAATA
1 TATATAGTTTTTTGAAA-A
51748 TATATA
1 TATATA
51754 TATATATAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
15 6 0.18
16 7 0.21
17 8 0.24
18 12 0.36
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (18 bp):
TATATAGTTTTTTGAAAA
Found at i:53624 original size:11 final size:11
Alignment explanation
Indices: 53608--53646 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
53598 TAAGTTTAAA
53608 ATTTTAAATTT
1 ATTTTAAATTT
53619 ATTTTAAATTT
1 ATTTTAAATTT
* *
53630 ATTTTCAATTC
1 ATTTTAAATTT
53641 ATTTTA
1 ATTTTA
53647 TTTATCTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (11 bp):
ATTTTAAATTT
Done.