Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003082.1 Hibiscus syriacus cultivar Beakdansim tig00006431_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54884

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
301--392
24
3.8
24
80
0
94
47
15
17
19
1.82
299--409
48
2.3
48
82
3
125
48
15
16
19
1.81
2511--2543
13
2.4
14
85
10
50
21
21
30
27
1.98
2511--2567
27
2.0
29
83
6
73
22
22
28
26
1.99
2511--2567
14
4.1
14
80
13
64
22
22
28
26
1.99
4682--4724
20
2.2
20
87
4
61
34
9
6
48
1.62
8359--8401
20
2.2
20
87
4
61
34
9
6
48
1.62
8906--8954
15
3.1
15
77
16
55
12
28
0
59
1.34
11274--11313
14
2.9
14
84
0
53
77
5
0
17
0.94
19100--19151
22
2.3
23
81
15
65
13
19
0
67
1.23
23579--31239
174
43.8
174
88
2
10837
36
15
11
35
1.84
24280--24310
15
2.1
15
100
0
62
74
0
19
6
1.03
24106--24484
189
2.0
189
93
1
652
40
14
11
34
1.81
26032--26062
15
2.1
15
100
0
62
74
0
19
6
1.03
29179--29209
15
2.1
15
100
0
62
74
0
19
6
1.03
32498--32543
22
2.1
22
83
0
56
32
4
2
60
1.28
33068--33097
15
2.0
15
100
0
60
40
26
6
26
1.81
35303--35651
131
2.7
131
82
1
412
41
17
10
30
1.82
36242--36311
29
2.5
26
77
20
70
60
5
10
24
1.51
37477--37523
21
2.2
21
96
0
85
25
8
42
23
1.82
37747--37782
3
12.7
3
88
11
58
69
0
0
30
0.89
38248--38294
23
2.0
23
87
0
67
23
12
17
46
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38782--38820
21
1.9
20
84
5
51
33
28
12
25
1.93
50038--50071
9
3.7
9
84
7
50
0
55
0
44
0.99

Tables:   1

The End!