Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003083.1 Hibiscus syriacus cultivar Beakdansim tig00006437_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54995

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1486--1525
16
2.6
16
96
4
73
55
0
12
32
1.38
204--2222
799
2.6
771
78
10
2083
36
9
16
36
1.82
2954--3007
28
1.9
28
85
7
74
27
27
18
25
1.98
11415--11502
21
4.2
21
92
0
149
29
27
21
21
1.99
11409--11502
42
2.2
42
96
0
170
30
27
21
20
1.98
11511--11666
21
7.6
20
85
7
117
23
21
22
32
1.98
11552--11624
20
3.7
20
100
0
146
23
20
16
39
1.92
12419--12535
21
5.6
21
79
9
123
21
21
25
31
1.98
15954--16003
23
2.2
23
88
0
73
36
14
0
50
1.43
16294--16338
3
14.7
3
86
4
63
31
2
0
66
1.04
16289--16337
9
5.2
9
80
7
53
26
4
0
69
1.06
18730--18787
28
2.1
28
87
6
84
31
5
1
62
1.27
21277--21318
15
2.9
14
80
19
59
21
14
7
57
1.61
26907--27076
75
2.3
75
83
0
196
29
18
22
30
1.97
28319--28395
22
3.5
23
79
13
90
35
15
12
36
1.86
29059--31471
45
53.8
45
92
2
3947
21
23
19
35
1.96
29143--29209
33
2.0
33
97
0
125
16
23
26
32
1.96
29098--29254
78
2.0
78
94
0
278
19
22
22
35
1.96
29509--29585
26
3.2
26
61
21
67
23
24
15
36
1.94
30173--30239
33
2.0
33
97
0
125
16
23
26
32
1.96
30128--30284
78
2.0
78
94
0
278
19
22
22
35
1.96
30539--30615
26
3.2
26
61
21
67
23
24
15
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31578--31651
3
23.7
3
83
8
85
39
1
0
59
1.06
34675--34725
19
2.8
17
78
18
57
33
3
0
62
1.13
39158--39191
2
17.0
2
93
0
59
47
2
0
50
1.16
40591--40678
3
29.0
3
88
6
133
67
0
1
31
0.99
41304--41405
42
2.5
42
85
4
127
35
20
19
24
1.96
41341--41406
20
3.2
20
66
16
53
39
21
16
22
1.92
43854--43898
17
2.7
17
89
3
74
0
13
0
86
0.57
43867--43898
10
3.2
10
100
0
64
0
9
0
90
0.45
48808--48854
3
15.7
3
86
8
69
70
0
0
29
0.88
48799--48854
17
3.0
20
87
12
84
67
0
0
32
0.91
48800--48860
22
2.9
22
76
13
65
70
1
0
27
0.97

Tables:   1

The End!