genome.fa.s3085.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003085.1 Hibiscus syriacus cultivar Beakdansim tig00006439_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82678

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1593--1646	22	2.5	22	88	5	76	25	14	25	33	1.95
1953--2230	55	5.1	55	84	3	309	33	17	19	29	1.95
1953--2214	109	2.4	108	84	5	327	33	17	19	29	1.94
2885--2998	23	5.0	21	75	15	68	78	0	17	3	0.95
2895--2997	8	13.4	8	75	22	71	79	0	17	1	0.88
2906--2992	9	8.6	10	75	15	72	80	1	17	1	0.84
2907--2995	11	7.8	11	76	14	74	80	1	16	1	0.83
2914--2997	39	2.2	38	89	6	125	80	1	16	1	0.83
5165--5276	41	2.7	40	71	9	100	26	17	21	33	1.96
5012--5677	273	2.4	270	85	4	845	29	14	18	37	1.91
5438--5549	41	2.7	42	80	5	113	28	18	21	31	1.97
6419--6660	91	2.7	92	89	1	362	39	14	21	23	1.91
6623--6688	23	3.2	23	66	28	65	39	15	21	24	1.91
6607--6701	39	2.4	39	94	0	172	43	13	21	22	1.87
6613--6688	22	3.7	23	65	24	60	40	14	22	22	1.90
6637--6696	17	3.2	17	68	28	50	45	10	21	23	1.82
6513--6791	130	2.2	129	86	1	380	39	16	21	23	1.92
6643--7441	91	8.8	91	87	1	1057	38	15	20	25	1.92
6643--7441	366	2.2	363	87	2	1156	38	15	20	25	1.92
7511--7574	17	3.3	19	67	20	51	43	14	18	23	1.86
9115--9444	54	6.1	54	86	3	425	33	20	20	26	1.97
10122--10176	27	2.0	27	82	6	67	5	16	7	70	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19351--19484	38	3.6	38	87	3	173	46	5	4	44	1.46
24380--24516	61	2.2	61	81	6	157	26	17	27	29	1.98
25313--25376	21	3.2	21	64	20	55	50	12	3	34	1.56
26498--26536	21	1.9	20	89	5	60	66	20	0	12	1.24
27365--27403	20	2.0	20	89	0	60	33	23	10	33	1.88
28008--28040	13	2.5	14	85	14	52	18	18	0	63	1.31
36000--36078	39	2.0	39	90	0	122	49	12	1	36	1.49
49352--49483	71	1.9	71	87	3	194	36	19	15	28	1.93
49354--49491	35	3.9	35	71	11	111	36	19	14	28	1.91
56983--57016	16	2.1	16	89	10	52	26	5	0	67	1.13
60547--60648	47	2.2	47	81	0	114	29	18	20	31	1.97
66838--66885	21	2.3	20	80	13	53	52	0	0	47	1.00
78550--78658	24	4.5	24	78	0	92	50	17	11	20	1.77
80281--80337	20	2.8	20	73	7	62	35	29	12	22	1.91
80326--80412	20	4.3	20	82	0	102	33	21	19	25	1.97
80323--80412	40	2.2	40	82	0	117	34	21	18	25	1.96
80571--80623	22	2.4	22	90	0	79	20	37	16	24	1.93
82573--82622	21	2.4	21	86	0	64	22	14	32	32	1.93

Tables:   1

The End!