Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003086.1 Hibiscus syriacus cultivar Beakdansim tig00006442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56866

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3410--3440
16
1.9
16
93
0
53
32
0
35
32
1.58
4371--4412
16
2.7
15
79
13
50
76
7
2
14
1.10
7484--7525
17
2.4
17
88
4
57
40
4
4
50
1.45
7722--7760
19
2.0
20
85
14
55
43
2
0
53
1.14
13320--13362
4
9.8
4
92
5
50
72
4
2
20
1.14
15401--15824
211
2.0
211
97
0
794
34
20
9
34
1.85
19989--20015
14
1.9
14
100
0
54
18
14
22
44
1.86
20282--20679
59
6.8
59
90
1
595
35
19
12
32
1.89
21017--21234
95
2.3
96
84
0
276
25
23
14
35
1.93
23842--24293
179
2.5
179
87
2
626
34
19
12
34
1.89
23842--24299
59
7.8
59
87
2
634
34
19
12
33
1.89
24628--24681
22
2.6
20
83
11
72
27
29
14
27
1.95
24648--24846
75
2.7
75
88
3
278
24
25
16
33
1.96
31728--31757
15
2.0
15
93
0
51
23
0
10
66
1.21
32820--32847
13
2.2
13
100
0
56
39
14
0
46
1.44
35834--35861
14
2.0
14
100
0
56
35
28
7
28
1.84
36576--36644
2
34.5
2
97
0
129
49
0
1
49
1.09
54478--54521
23
1.9
23
85
0
61
50
13
15
20
1.78

Tables:   1

The End!