Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003087.1 Hibiscus syriacus cultivar Beakdansim tig00006443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85795

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7923--8002
30
2.7
31
77
12
96
30
8
21
40
1.83
7923--7999
15
5.1
15
71
12
68
31
9
19
40
1.83
8122--8193
23
3.1
23
76
7
74
25
22
25
27
2.00
8106--8177
24
3.0
24
81
2
83
23
22
22
31
1.98
8106--8216
47
2.4
47
83
3
125
20
22
23
33
1.97
12831--12855
6
4.2
6
100
0
50
52
0
0
48
1.00
14162--14191
15
2.0
15
93
0
51
36
3
6
53
1.44
14743--14794
20
2.8
19
80
8
54
50
3
0
46
1.20
15260--15340
28
3.2
26
76
13
73
32
3
2
61
1.26
15260--15326
28
2.5
28
83
7
77
34
2
2
59
1.28
19966--20000
2
17.5
2
100
0
70
48
0
0
51
1.00
20302--20333
9
3.7
9
91
8
57
93
0
6
0
0.34
20302--20348
16
2.9
16
87
3
58
87
4
8
0
0.67
25114--25190
22
3.5
22
92
0
136
32
11
14
41
1.82
25701--26025
165
2.0
167
92
2
548
34
13
12
39
1.83
26028--26755
76
9.6
76
93
0
1208
23
19
21
35
1.96
26687--26791
46
2.3
46
93
1
176
25
20
17
36
1.94
26915--26981
3
21.0
3
84
6
71
40
1
0
58
1.07
26915--26982
28
2.3
30
90
5
104
41
1
0
57
1.08
28276--28300
2
12.5
2
100
0
50
48
0
0
52
1.00
28178--28572
140
2.8
145
82
7
465
38
7
7
47
1.59
28551--28588
17
2.2
17
90
0
58
42
0
0
57
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29866--30151
74
3.9
74
96
0
518
39
11
15
33
1.83
35510--35569
26
2.3
26
100
0
120
40
11
16
31
1.85
35536--35746
74
2.9
74
93
0
359
38
11
15
35
1.83
35539--35771
74
3.2
72
84
7
308
39
11
14
35
1.82
38657--38769
59
1.9
59
85
0
154
28
15
29
27
1.96
38810--39128
59
5.4
59
85
1
381
31
14
24
29
1.95
39138--40110
38
26.1
36
70
11
443
37
14
15
32
1.88
39138--39589
74
6.0
74
78
8
364
37
15
15
31
1.89
39151--40066
112
8.2
112
77
5
827
37
14
16
31
1.89
39265--40103
74
11.3
74
82
4
936
37
14
16
32
1.88
42895--42945
24
2.0
26
88
7
79
56
7
15
19
1.63
43822--43867
18
2.5
19
85
3
58
76
10
2
10
1.12
45319--45398
26
3.1
26
90
0
133
7
28
5
58
1.46
46382--46406
13
1.9
13
100
0
50
32
0
4
64
1.12
52906--52934
2
14.5
2
100
0
58
48
0
0
51
1.00
53611--53768
45
3.5
44
92
1
244
25
22
12
39
1.89
54171--54244
22
3.6
22
74
20
70
25
25
17
31
1.97
54267--54337
20
3.5
20
90
5
108
19
33
16
29
1.94
55723--56057
181
1.9
180
94
0
589
33
18
14
34
1.91
67262--67290
14
2.0
15
93
6
51
17
13
13
55
1.70
68646--68815
60
2.8
60
82
7
202
40
5
21
31
1.77
68695--68793
29
3.3
29
68
10
83
39
4
23
33
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69119--69143
13
1.9
13
100
0
50
52
0
0
48
1.00
74137--74167
2
15.5
2
100
0
62
48
0
0
51
1.00
79697--79727
15
2.1
15
100
0
62
45
6
19
29
1.75
82601--82662
22
2.8
22
90
0
97
27
24
19
29
1.98

Tables:   1

The End!