genome.fa.s3088.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003088.1 Hibiscus syriacus cultivar Beakdansim tig00006446_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148479

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201--241	20	2.0	21	85	4	57	43	4	4	46	1.46
1675--1894	63	3.5	63	81	5	212	34	20	18	27	1.96
2369--2401	15	2.2	15	100	0	66	15	18	33	33	1.92
8524--8739	62	3.5	63	82	5	208	34	19	17	28	1.95
9044--9079	12	3.0	12	91	0	63	33	5	25	36	1.79
9060--9110	23	2.2	22	86	10	66	39	5	23	31	1.79
14207--14245	17	2.3	17	81	0	51	58	7	2	30	1.39
28351--28420	36	1.9	36	88	0	104	42	7	10	40	1.66
29163--29542	185	2.1	185	88	5	572	46	7	3	42	1.49
45037--45067	12	2.5	13	94	5	55	48	0	0	51	1.00
44947--45047	29	3.5	29	98	0	193	52	5	6	34	1.53
45079--45135	25	2.1	29	84	12	77	52	3	0	43	1.18
47666--47692	4	6.8	4	100	0	54	25	0	0	74	0.83
48392--48484	20	4.7	20	85	5	116	29	22	21	26	1.99
49304--49357	24	2.2	24	90	0	81	20	16	20	42	1.89
49547--49583	14	2.6	14	91	4	56	51	21	21	5	1.68
51619--51653	18	1.9	18	94	0	61	54	22	2	20	1.58
51831--52057	20	11.7	20	83	6	261	34	22	20	23	1.97
51828--52057	74	3.0	78	80	9	281	34	21	20	23	1.97
51836--52017	94	1.9	93	86	1	256	35	22	19	21	1.96
52798--52909	42	2.7	42	78	8	113	23	17	37	21	1.94
53406--53479	20	3.7	20	81	0	94	44	17	14	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53406--53501	20	4.8	20	81	0	93	40	18	16	23	1.91
53416--53501	40	2.2	40	84	0	118	40	19	17	22	1.91
53545--53591	20	2.4	19	86	13	60	19	19	27	34	1.96
55500--55567	20	3.5	20	85	2	93	50	23	14	11	1.76
55942--55997	22	2.5	23	82	8	80	17	16	42	23	1.88
56163--56236	20	3.7	20	77	0	76	31	17	21	29	1.96
56220--56296	20	3.8	20	81	6	102	24	22	18	35	1.96
56209--56300	40	2.3	40	94	0	166	25	20	19	34	1.96
58009--58075	20	3.3	20	75	8	73	29	25	19	25	1.98
58048--58091	20	2.2	20	87	0	61	29	25	18	27	1.98
58266--58316	22	2.3	22	82	0	66	25	43	11	19	1.85
58691--58807	20	6.2	20	75	11	95	17	18	23	39	1.92
58706--58808	53	1.9	54	86	2	145	15	18	24	41	1.89
58691--58829	73	1.9	73	88	2	208	20	17	21	40	1.92
60587--60648	14	4.3	14	73	6	52	40	0	12	46	1.42
60589--60643	29	1.9	29	85	3	76	38	0	14	47	1.45
60762--60800	20	2.0	20	94	0	69	51	25	15	7	1.70
60843--60973	20	6.8	20	81	10	148	27	19	21	32	1.97
60799--60973	94	1.9	93	85	5	246	25	18	21	34	1.96
60948--61226	140	2.0	140	97	0	522	43	15	12	28	1.83
61279--61324	18	2.6	18	85	0	65	17	4	28	50	1.65
61297--61332	12	3.0	12	100	0	72	16	8	25	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61297--61342	24	2.0	23	86	4	65	15	8	21	54	1.68
63579--63632	24	2.2	24	93	0	90	40	16	18	24	1.90
64451--64579	40	3.2	39	77	8	125	26	17	24	31	1.97
64451--64578	20	6.3	20	74	8	107	25	17	25	31	1.97
64466--64578	41	2.8	42	87	4	160	25	17	23	32	1.97
73098--73144	13	3.6	13	80	8	51	68	0	2	29	1.02
73088--73190	54	1.9	53	83	13	131	63	1	1	33	1.17
73160--73202	18	2.5	17	85	7	61	67	2	4	25	1.22
73081--73210	60	2.2	57	81	10	129	61	3	2	33	1.24
73559--73697	37	3.8	37	85	9	187	29	13	14	42	1.84
73590--73693	34	3.0	34	90	9	165	28	14	13	43	1.83
74242--75073	105	8.0	105	92	1	1278	22	17	26	34	1.96
75892--76061	65	2.6	65	92	0	288	37	11	18	32	1.87
75961--76214	102	2.5	102	95	0	454	37	12	20	29	1.89
75861--76178	167	1.9	169	92	1	532	37	12	20	30	1.89
76128--76232	36	2.9	37	92	1	176	39	14	21	24	1.91
76667--76702	18	2.0	18	94	0	63	41	33	8	16	1.78
77137--77180	22	2.0	22	91	8	72	27	11	22	38	1.88
77770--77823	23	2.3	25	84	9	69	0	14	9	75	1.03
77784--77843	14	3.9	16	81	14	58	0	13	8	78	0.96
77803--77845	14	3.1	13	87	12	59	0	11	9	79	0.95
77770--77837	24	2.9	23	80	18	70	0	14	8	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78960--78998	8	5.0	8	84	6	53	58	12	17	10	1.61
78960--78998	15	2.5	15	87	4	51	58	12	17	10	1.61
81810--81860	24	2.1	25	85	3	68	72	0	5	21	1.05
82050--82088	2	19.5	2	100	0	78	51	0	0	48	1.00
82137--82179	18	2.5	17	85	7	61	67	2	4	25	1.22
82537--82671	37	3.8	35	86	8	175	29	14	13	42	1.83
82568--82672	34	3.0	34	90	9	167	29	14	13	42	1.83
103357--103452	21	4.6	21	90	0	147	31	25	20	22	1.98
103461--103750	21	13.5	21	79	7	230	26	21	22	30	1.99
103415--103750	174	1.9	174	86	3	480	27	21	22	29	1.99
103931--103994	31	2.1	31	88	2	94	50	17	14	18	1.79
109576--109995	207	2.0	212	97	2	805	40	11	9	37	1.74
117839--117875	2	18.5	2	100	0	74	48	0	0	51	1.00
120242--120289	21	2.3	21	85	0	60	25	39	12	22	1.89
120293--120386	21	4.5	21	92	5	129	18	35	26	20	1.95
120909--121009	32	3.1	32	78	13	107	54	4	3	36	1.41
121393--122151	128	5.9	128	98	0	1464	32	19	24	22	1.97
122219--122259	8	5.2	8	82	5	57	36	29	0	34	1.58
129997--130108	60	1.9	58	81	7	136	29	24	6	40	1.79
134272--134556	43	6.7	43	86	0	374	23	24	17	34	1.96
142397--142441	21	2.1	21	95	0	81	13	28	22	35	1.92
147608--147639	2	16.0	2	93	0	55	46	0	0	53	1.00

Tables:   1

The End!