Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003089.1 Hibiscus syriacus cultivar Beakdansim tig00006448_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59251

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
968--1062
47
2.0
47
95
0
172
31
11
11
45
1.76
1098--1131
11
3.1
11
82
0
50
41
11
23
23
1.87
1517--1554
2
19.5
2
83
5
51
44
0
2
52
1.14
4654--4686
15
2.2
15
94
0
57
81
0
9
9
0.87
22021--22056
17
2.1
18
89
5
56
2
5
16
75
1.12
22579--22614
3
12.0
3
100
0
72
66
0
0
33
0.92
23242--23286
16
2.6
18
79
13
58
48
2
0
48
1.13
29693--29732
21
1.9
21
84
0
53
32
15
32
20
1.93
30443--30470
14
2.0
14
100
0
56
42
21
7
28
1.79
35162--35195
2
17.0
2
100
0
68
50
0
0
50
1.00
40527--40686
29
5.5
29
86
1
196
34
1
16
47
1.57
40599--40651
17
3.4
17
65
24
53
33
0
18
47
1.49
41576--41651
31
2.4
31
77
2
80
15
27
30
26
1.96
41715--41767
25
2.1
25
85
0
70
28
5
16
49
1.69
45854--45918
5
12.6
5
75
15
53
58
0
3
38
1.14
51098--51215
55
2.1
55
96
1
218
32
22
5
39
1.78
53848--53878
16
1.9
16
93
0
53
38
0
12
48
1.42
58211--58271
21
2.8
22
85
5
88
27
19
24
27
1.99

Tables:   1

The End!