genome.fa.s309.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000309.1 Hibiscus syriacus cultivar Beakdansim tig00000581_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62302

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574--680	2	55.5	2	90	7	177	47	0	0	51	1.07
7110--7184	2	37.5	2	97	0	141	49	0	1	49	1.09
9881--9924	13	3.4	13	81	9	54	56	0	0	43	0.99
9714--10146	147	2.7	151	82	13	482	57	1	3	37	1.25
9894--9940	18	2.6	18	80	12	51	59	0	2	38	1.09
9714--10167	158	2.9	158	83	11	521	56	1	3	38	1.25
10030--10122	16	5.6	16	71	12	71	62	1	1	35	1.10
10035--10112	25	3.0	26	74	20	74	65	1	0	33	1.01
10039--10117	32	2.4	31	82	14	88	64	1	0	34	1.02
10084--10129	13	3.3	14	77	19	51	65	0	2	32	1.05
14997--15508	260	2.0	257	87	3	742	31	17	19	32	1.95
17254--17309	23	2.5	22	80	5	60	41	7	19	32	1.79
20802--20913	35	3.2	35	89	0	170	41	22	0	34	1.60
21971--22082	35	3.2	34	86	5	152	34	0	21	42	1.59
22534--22687	20	7.7	20	97	1	281	40	19	20	20	1.92
22674--22801	60	2.1	60	85	0	175	31	25	17	26	1.97
22687--22796	20	5.5	20	92	0	166	29	26	17	27	1.97
27785--27854	20	3.5	19	86	7	95	37	27	17	18	1.93
27846--27899	14	3.5	14	73	22	54	44	20	24	11	1.83
27846--27921	33	2.3	34	97	2	145	44	19	23	11	1.84
27859--27925	20	3.7	19	72	22	72	46	19	22	11	1.82
27936--28098	33	4.8	33	93	3	254	12	22	19	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27936--28078	67	2.1	67	97	0	268	12	23	18	46	1.83
28204--28240	14	2.6	14	86	0	56	48	21	0	29	1.50
29621--29730	42	2.6	42	74	8	100	24	19	35	20	1.96
30212--30260	20	2.5	20	96	0	89	38	24	22	14	1.91
30309--30351	20	2.2	20	91	0	68	18	16	23	41	1.89
30390--30443	20	2.7	20	88	0	90	24	16	22	37	1.94
30275--30438	87	1.9	87	90	0	265	16	18	19	45	1.86
32325--32378	20	2.7	20	88	0	81	38	25	18	16	1.92
32726--32778	22	2.4	23	81	9	65	16	15	39	28	1.89
32967--33039	20	3.7	20	85	7	103	21	21	19	36	1.95
50336--50383	18	2.7	18	80	9	62	41	0	4	54	1.20

Tables:   1

The End!