genome.fa.s3090.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003090.1 Hibiscus syriacus cultivar Beakdansim tig00006449_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  172626

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3475--3561	19	4.5	19	91	4	129	50	24	16	9	1.73
3557--3740	19	10.1	19	74	15	156	11	22	22	42	1.86
3629--3712	33	2.5	33	92	1	132	11	23	26	38	1.90
3570--3740	39	4.8	36	78	12	147	11	22	22	43	1.85
5796--5862	21	3.2	21	66	6	55	23	35	20	19	1.95
5769--5862	42	2.2	42	81	7	102	22	35	21	21	1.96
7214--7249	14	2.6	14	95	0	63	30	0	25	44	1.54
7451--7507	14	3.7	14	70	20	51	10	28	21	40	1.86
7432--7591	33	4.8	33	90	6	252	13	23	20	42	1.88
10674--10751	20	3.9	20	91	0	120	37	20	23	19	1.95
10775--10828	14	3.5	14	77	22	63	11	20	20	48	1.80
10757--10827	33	2.2	33	84	0	88	19	19	21	39	1.93
10770--10847	33	2.4	33	91	0	120	12	23	21	42	1.87
12837--12922	19	4.5	19	85	4	111	39	23	23	13	1.90
12838--12911	39	1.9	38	88	2	112	37	22	24	14	1.92
12948--13011	19	3.7	18	74	21	73	14	18	20	46	1.83
12997--13039	20	2.2	20	87	4	61	18	23	20	37	1.94
13005--13050	20	2.3	20	88	0	65	15	21	26	36	1.93
13523--13567	18	2.5	18	85	0	63	15	15	42	26	1.87
14886--14923	20	1.9	20	88	0	58	50	21	15	13	1.78
15417--15469	20	2.7	20	93	0	88	24	18	28	28	1.98
15397--15511	20	5.7	20	77	5	79	24	17	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15503--15595	41	2.3	41	96	0	132	20	23	16	39	1.91
15500--15592	20	4.6	20	75	4	87	19	24	17	38	1.92
22890--22942	17	3.1	17	81	5	54	43	9	0	47	1.36
63975--64238	137	2.0	132	83	6	334	39	9	10	40	1.71
64796--64847	20	2.6	20	96	0	95	38	26	13	21	1.90
64903--65095	20	9.6	20	78	5	192	35	24	20	19	1.96
64922--65093	60	2.8	60	83	0	236	34	24	20	20	1.96
65477--65547	33	2.2	33	92	0	115	11	22	18	47	1.80
65668--65722	14	3.6	14	73	21	56	41	23	25	9	1.83
65668--65738	33	2.2	33	94	0	124	43	25	22	8	1.81
65734--65831	19	5.7	19	70	22	81	10	24	22	42	1.84
65756--65845	14	5.7	14	74	23	81	8	25	23	42	1.83
65739--65853	33	3.5	33	95	0	212	9	24	20	45	1.81
67551--68017	185	2.5	186	98	0	909	22	12	19	46	1.83
67551--68017	93	5.0	93	98	0	909	22	12	19	46	1.83
68049--68177	19	7.3	19	75	17	125	45	28	17	8	1.77
68085--68177	33	2.8	32	91	4	150	46	27	18	7	1.76
68049--68177	52	2.5	52	74	14	140	45	28	17	8	1.77
68173--68307	19	7.6	19	75	16	128	11	19	23	45	1.82
68195--68251	14	3.7	14	77	20	60	10	21	22	45	1.82
68178--68270	33	2.8	33	95	0	168	10	20	21	47	1.80
70233--70268	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70375--70476	19	5.6	19	84	13	151	44	17	23	14	1.86
70483--70773	33	8.5	35	82	14	253	14	20	18	46	1.83
70505--70773	19	15.4	19	78	18	309	13	20	18	47	1.82
70483--70745	52	5.0	52	79	13	299	14	21	17	46	1.83
70543--70597	14	3.6	14	78	21	65	10	20	20	49	1.78
70483--70720	85	2.8	83	88	8	322	14	21	18	46	1.83
73253--73299	24	2.0	24	87	8	69	38	21	14	25	1.92
73982--74350	20	18.5	20	86	4	458	20	18	26	34	1.96
74406--74457	20	2.6	20	96	0	95	21	13	26	38	1.90
77009--77107	24	4.2	24	86	1	137	20	16	20	43	1.88
77250--77320	35	2.0	35	94	0	124	16	22	14	46	1.83
91719--91754	18	1.9	19	94	5	65	41	0	5	52	1.24
95695--95834	64	2.2	63	83	6	167	32	16	24	26	1.96
96832--96954	31	4.0	31	85	10	137	23	21	21	34	1.97
96943--97014	29	2.4	30	84	6	85	20	19	29	30	1.97
97298--97357	2	30.0	2	100	0	120	50	0	0	50	1.00
99316--99490	90	2.0	89	95	1	314	37	9	6	45	1.64
100997--101153	64	2.5	64	81	10	196	35	17	19	27	1.94
101535--101673	29	4.8	29	96	1	253	45	16	20	17	1.86
107354--107495	64	2.2	65	81	10	168	35	19	17	26	1.94
107874--107983	29	3.8	29	95	2	195	45	16	20	17	1.85
108067--108095	15	1.9	15	100	0	58	20	24	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108203--108268	18	3.7	18	97	2	125	28	34	4	31	1.78
117601--117648	23	2.1	23	100	0	96	29	12	20	37	1.90
123038--123096	23	2.6	22	86	2	73	55	10	16	16	1.67
124583--124627	21	2.1	21	84	8	56	55	15	20	8	1.66
124598--124668	23	3.2	23	80	9	76	54	14	18	12	1.70
124678--124716	10	3.9	10	89	0	60	82	2	7	7	0.94
126929--127016	42	2.1	42	86	0	122	25	17	22	35	1.95
127094--127119	6	4.3	6	100	0	52	34	50	15	0	1.45
127748--127787	5	7.6	5	97	2	62	0	20	55	25	1.44
127751--127797	5	8.5	6	95	2	57	0	14	55	29	1.40
127870--127963	41	2.3	41	94	3	163	29	27	20	22	1.98
136953--136996	19	2.3	19	84	7	54	54	4	2	38	1.33
150546--150597	19	2.6	19	77	17	61	36	1	7	53	1.41
159153--159286	67	2.0	67	98	0	259	28	24	8	38	1.86
159408--159535	64	2.0	65	95	1	231	30	14	16	38	1.89
162941--163081	70	2.0	72	85	4	196	44	9	7	37	1.67
164532--164581	6	8.3	6	80	8	57	62	12	26	0	1.30
164530--164581	18	2.9	18	94	0	86	59	13	26	0	1.34
171550--171575	3	8.7	3	100	0	52	69	0	0	30	0.89
171598--171636	1	39.0	1	89	0	51	92	0	5	2	0.46

Tables:   1

The End!