Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003092.1 Hibiscus syriacus cultivar Beakdansim tig00006451_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71851

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
234--280
19
2.5
19
80
13
53
31
6
0
61
1.21
484--521
19
2.0
19
85
10
51
50
0
0
50
1.00
1019--1066
21
2.4
21
86
6
64
31
2
2
64
1.16
11682--11717
10
3.5
10
92
3
54
88
0
8
2
0.59
11682--11722
11
3.7
11
87
9
57
87
0
9
2
0.62
11684--11725
7
6.0
7
83
10
50
85
0
11
2
0.68
11691--11724
17
2.1
16
94
5
59
91
0
8
0
0.43
12077--12125
19
2.8
17
78
9
55
38
6
6
48
1.53
12419--12755
114
3.0
114
95
0
584
35
15
19
30
1.92
13311--13729
116
3.7
110
84
8
425
38
14
19
27
1.90
13528--13815
121
2.4
121
89
4
417
40
16
19
23
1.90
13960--14020
3
20.7
3
74
15
56
34
0
0
65
0.93
13960--14006
12
4.1
12
89
8
71
29
0
0
70
0.88
13972--14020
20
2.4
21
82
6
64
34
0
0
65
0.93
15633--15674
20
2.2
19
86
4
57
33
0
2
64
1.07
19010--19190
89
2.0
89
100
0
362
35
13
17
33
1.88
19651--19676
4
6.5
4
100
0
52
23
0
0
76
0.78
20190--20224
17
2.1
17
94
0
61
45
11
17
25
1.81
21297--21330
16
2.2
16
89
5
52
44
0
0
55
0.99
21467--21521
20
2.8
20
91
2
85
20
23
9
47
1.78
36307--36352
13
3.5
13
79
5
56
80
4
0
15
0.86
40909--40954
22
2.1
22
88
4
67
21
17
28
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44896--44934
16
2.5
17
88
12
57
35
0
0
64
0.94
45663--45713
23
2.2
23
79
6
59
13
13
15
56
1.67
46835--46887
21
2.5
21
84
0
70
20
26
18
33
1.96
46877--46970
20
4.7
20
81
2
125
37
19
21
22
1.95
47845--47898
24
2.2
24
90
0
81
22
16
20
40
1.91
50321--50403
20
4.2
20
85
3
114
37
25
19
18
1.94
50325--50407
40
2.1
40
90
4
132
39
25
18
16
1.91
50432--50513
19
4.6
18
75
15
73
46
17
24
12
1.82
50523--50618
33
2.9
34
87
3
131
14
22
19
42
1.88
52092--52202
42
2.6
42
76
7
107
24
18
37
18
1.94
52681--52834
34
4.4
34
76
11
157
41
22
20
15
1.90
52749--52817
20
3.5
20
91
0
102
36
23
20
20
1.95
52862--53065
20
10.5
20
90
6
312
19
19
21
39
1.92
54950--55039
20
4.6
20
84
1
101
46
23
15
14
1.82
55375--55436
18
3.0
21
72
18
58
20
16
37
25
1.93
55612--55664
20
2.7
20
93
0
97
24
20
20
33
1.97
55652--55748
21
4.6
21
93
0
122
35
18
26
19
1.95
55652--55748
42
2.3
42
90
0
158
35
18
26
19
1.95
61538--61651
58
1.9
59
87
5
169
41
2
21
34
1.67
61520--61661
59
2.4
59
82
9
182
40
2
21
35
1.68
65220--65251
6
5.3
6
100
0
64
65
0
0
34
0.93
67835--67916
29
2.8
29
94
1
137
31
13
13
41
1.83

Tables:   1

The End!